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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4kqs IPE Farnesyl pyrophosphate synthase 2.5.1.10

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4kqs IPEFarnesyl pyrophosphate synthase 2.5.1.10 1.059
4nke IPEFarnesyl pyrophosphate synthase 2.5.1.10 0.947
3ldw IPEFarnesyl pyrophosphate synthase, putative / 0.921
3ez3 IPEFarnesyl pyrophosphate synthase, putative / 0.845
1rqj IPEFarnesyl diphosphate synthase 2.5.1.10 0.836
4lfg IPEPutative geranyltranstransferase / 0.832
3krf IPEGeranyl diphosphate synthase large subunit / 0.806
2qrd ADP5'-AMP-activated protein kinase subunit gamma / 0.680
4cnz ADPNitrogen regulatory protein P-II 1 / 0.679
2fsn ADPArchaeal actin homolog / 0.669
4hut ATPCob(I)yrinic acid a,c-diamide adenosyltransferase 2.5.1.17 0.666
1wua ATPActin, alpha skeletal muscle / 0.659
5bnw 12VUDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit / 0.655
5bv3 M7Gm7GpppX diphosphatase 3.6.1.59 0.654