Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4kq2 1S3 Glycogen [starch] synthase isoform 2 2.4.1.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
4kq2 1S3Glycogen [starch] synthase isoform 2 2.4.1.11 0.910
1noi NTZGlycogen phosphorylase, muscle form 2.4.1.1 0.693
5gpb GPMGlycogen phosphorylase, muscle form 2.4.1.1 0.668
1uqu UPGTrehalose-6-phosphate synthase 2.4.1.15 0.658