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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4kp5 E1F Carbonic anhydrase 12 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4kp5 E1FCarbonic anhydrase 12 4.2.1.1 0.956
3l14 I7BCarbonic anhydrase 2 4.2.1.1 0.775
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.750
3sax E50Carbonic anhydrase 2 4.2.1.1 0.740
4knm E1ECarbonic anhydrase 13 4.2.1.1 0.738
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.730
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.723
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.716
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.713
4knj E1FCarbonic anhydrase 2 4.2.1.1 0.711
4kni E1ECarbonic anhydrase 2 4.2.1.1 0.707
3bl1 BL1Carbonic anhydrase 2 4.2.1.1 0.702
3myq E27Carbonic anhydrase 2 4.2.1.1 0.688
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.680
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.679
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.679
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.673
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.670
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.668
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.663
2nn7 M29Carbonic anhydrase 1 4.2.1.1 0.661
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.660
1okm SABCarbonic anhydrase 2 4.2.1.1 0.658
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.658
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.657
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.657
1okn STBCarbonic anhydrase 2 4.2.1.1 0.656
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.656
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.655
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.655
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.654
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.653
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.651
3mho J43Carbonic anhydrase 2 4.2.1.1 0.650