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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4kov KOV Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4kov KOVUncharacterized protein / 0.990
4kow CFXUncharacterized protein / 0.930
4kox CLSUncharacterized protein / 0.901
4kot CE3Uncharacterized protein / 0.885
4kos 4KOUncharacterized protein / 0.840
4koy CSCUncharacterized protein / 0.836
4kou C04Uncharacterized protein / 0.819
4yau 2AMNADPH--cytochrome P450 reductase / 0.663
4bb3 KKAIsopenicillin N synthase 1.21.3.1 0.661
1fnd A2PFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.660
4i13 FOLDihydrofolate reductase 1.5.1.3 0.658
3hji FADVivid PAS protein VVD / 0.657
3ojx NAPNADPH--cytochrome P450 reductase / 0.657