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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ko0 JLJ Gag-Pol polyprotein 2.7.7.49

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ko0 JLJGag-Pol polyprotein 2.7.7.49 1.044
1rt4 UC1Gag-Pol polyprotein 2.7.7.49 0.763
4kko 1REGag-Pol polyprotein 2.7.7.49 0.754
1jlg UC1Gag-Pol polyprotein 2.7.7.49 0.687
1s1w UC1Gag-Pol polyprotein 2.7.7.49 0.671
1tkx GWBGag-Pol polyprotein 2.7.7.49 0.665
4ifv T27Gag-Pol polyprotein 2.7.7.49 0.664
3meg T27Gag-Pol polyprotein 2.7.7.49 0.662
3m8p 65BGag-Pol polyprotein 2.7.7.49 0.652
1tkt H12Gag-Pol polyprotein 2.7.7.49 0.650