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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4kky CAM Camphor 5-monooxygenase 1.14.15.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4kky CAMCamphor 5-monooxygenase 1.14.15.1 0.831
2m56 CAMCamphor 5-monooxygenase 1.14.15.1 0.799
1t87 CAMCamphor 5-monooxygenase 1.14.15.1 0.778
1dz6 CAMCamphor 5-monooxygenase 1.14.15.1 0.769
4ek1 CAMCamphor 5-monooxygenase 1.14.15.1 0.766
4g3r CAMCamphor 5-monooxygenase 1.14.15.1 0.764
1dz4 CAMCamphor 5-monooxygenase 1.14.15.1 0.761
3fwj CAMCamphor 5-monooxygenase 1.14.15.1 0.751
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
2a1m CAMCamphor 5-monooxygenase 1.14.15.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
3l63 CAMCamphor 5-monooxygenase 1.14.15.1 0.730
1o76 CAMCamphor 5-monooxygenase 1.14.15.1 0.704
4l4e CAMCamphor 5-monooxygenase 1.14.15.1 0.698
4l4f CAMCamphor 5-monooxygenase 1.14.15.1 0.698
1iwi CAMCamphor 5-monooxygenase 1.14.15.1 0.691
4l4a CAMCamphor 5-monooxygenase 1.14.15.1 0.690
4l4c CAMCamphor 5-monooxygenase 1.14.15.1 0.686
4l4b CAMCamphor 5-monooxygenase 1.14.15.1 0.685
2a1o CAMCamphor 5-monooxygenase 1.14.15.1 0.682
4c9o CAMCytochrome P450 / 0.666
2z97 CAMCamphor 5-monooxygenase 1.14.15.1 0.664
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660