scPDB - Distribution of Binding mode Similarity values of 4khn entry / Site 2

Distribution of Interaction pattern similarity measured by Grim

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Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4khn	XG4	DNA-directed DNA polymerase

Complex with similar interaction patterns:

PDB ID	HET	Uniprot Name	EC Number	Binding Mode Similarity
4khn	XG4	DNA-directed DNA polymerase	/	0.917
3cfo	GMP	DNA-directed DNA polymerase	/	0.733
1ih7	GMP	DNA-directed DNA polymerase	/	0.668