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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4kh0 ATP Aspartate carbamoyltransferase regulatory chain {ECO:0000256|HAMAP-Rule:MF_00002}

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4kh0 ATPAspartate carbamoyltransferase regulatory chain {ECO:0000256|HAMAP-Rule:MF_00002} / 0.910
4fyx UTPAspartate carbamoyltransferase regulatory chain / 0.782
4brg GNPEctonucleoside triphosphate diphosphohydrolase I / 0.673
4bri UNPEctonucleoside triphosphate diphosphohydrolase I / 0.671
4brd ANPEctonucleoside triphosphate diphosphohydrolase I / 0.670
4zwg DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.669
4bzc T8TDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.667
1zw5 ZOLFarnesyl pyrophosphate synthase 2.5.1.10 0.665
2jas DTPDeoxyguanosine kinase / 0.664
1jjt BDSBeta-lactamase / 0.662
4a6a TTPdCTP deaminase 3.5.4.13 0.662
4zir ANPEnergy-coupling factor transporter ATP-binding protein EcfA2 3.6.3 0.662
4zir ANPEnergy-coupling factor transporter ATP-binding protein EcfA1 / 0.662
3b05 IPEIsopentenyl-diphosphate delta-isomerase / 0.658
4pki ATPActin, alpha skeletal muscle / 0.657
2dxe GDPNucleoside diphosphate kinase 2.7.4.6 0.656
1dej ATPMajor actin / 0.655
1eqy ATPActin, alpha skeletal muscle / 0.655
4fvq ATPTyrosine-protein kinase JAK2 / 0.655
5bsm ATP4-coumarate--CoA ligase 2 6.2.1.12 0.655
2whx ADPGenome polyprotein 3.4.21.91 0.654
3m1f ATPActin, alpha skeletal muscle / 0.654
3ffk ATPActin, alpha skeletal muscle / 0.652
1rqj RISFarnesyl diphosphate synthase 2.5.1.10 0.650
4ey2 0RMMetallo-beta-lactamase type 2 / 0.650