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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4kgk GTP Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4kgk GTPUncharacterized protein / 0.872
4kgm ATPUncharacterized protein / 0.715
3sup DCPDNA-directed DNA polymerase / 0.696
3wbz ATPtRNA(His) guanylyltransferase {ECO:0000256|PIRNR:PIRNR028980} / 0.690
4dtp DGTDNA-directed DNA polymerase / 0.687
3otb DGTProbable tRNA(His) guanylyltransferase 2.7.7.79 0.682
3lzj CTPDNA-directed DNA polymerase / 0.674
4dto DCPDNA-directed DNA polymerase / 0.672
3ne6 DCPDNA-directed DNA polymerase / 0.658
4fj5 DTPDNA-directed DNA polymerase / 0.656
4k97 ATPCyclic GMP-AMP synthase / 0.656
4ptf DCPDNA polymerase epsilon catalytic subunit A 2.7.7.7 0.654
4fjl DGTDNA-directed DNA polymerase / 0.652
4fk4 DGTDNA-directed DNA polymerase / 0.650