Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4kc2 WS2 Histo-blood group ABO system transferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4kc2 WS2Histo-blood group ABO system transferase / 0.986
4kc1 WS1Histo-blood group ABO system transferase / 0.977
4kc4 WS3Histo-blood group ABO system transferase / 0.957
3v0m 5GWHisto-blood group ABO system transferase / 0.869
3v0n 4GWHisto-blood group ABO system transferase / 0.863
5c4f UPGHisto-blood group ABO system transferase / 0.853
5c4b UPGHisto-blood group ABO system transferase / 0.852
3v0p 4GWHisto-blood group ABO system transferase / 0.848
5c1g GDUHisto-blood group ABO system transferase / 0.846
5c1h GDUHisto-blood group ABO system transferase / 0.842
3v0o 4GWHisto-blood group ABO system transferase / 0.828
3zgf IUGHisto-blood group ABO system transferase / 0.813
1g8o U5PN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.809
2vs5 GDUN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.806
5c8r UPGHisto-blood group ABO system transferase / 0.806
5c4c UPGHisto-blood group ABO system transferase / 0.800
5c3a URMHisto-blood group ABO system transferase / 0.750
3rmw UPGGlycogenin-1 2.4.1.186 0.743
5c3b URMHisto-blood group ABO system transferase / 0.739
5c47 URMHisto-blood group ABO system transferase / 0.739
1zdg UPGGlycogenin-1 2.4.1.186 0.734
5c1l GDUHisto-blood group ABO system transferase / 0.732
5c48 URMHisto-blood group ABO system transferase / 0.723
1zdf UPGGlycogenin-1 2.4.1.186 0.716
1ss9 UPFLgtC / 0.706
3gf4 U5PUDP-galactopyranose mutase 5.4.99.9 0.650