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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4k6i 9RA Retinoic acid receptor RXR-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4k6i 9RARetinoic acid receptor RXR-alpha / 1.214
1mzn BM6Retinoic acid receptor RXR-alpha / 0.998
3h0a 9RARetinoic acid receptor RXR-alpha / 0.751
1mvc BM6Retinoic acid receptor RXR-alpha / 0.735
1fby REARetinoic acid receptor RXR-alpha / 0.678
3fc6 REARetinoic acid receptor RXR-alpha / 0.666
2cbs R13Cellular retinoic acid-binding protein 2 / 0.657
4m8h R4MRetinoic acid receptor RXR-alpha / 0.651
1drt PCVClavaminate synthase 1 1.14.11.21 0.650
2b01 TUDPhospholipase A2, major isoenzyme 3.1.1.4 0.650