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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4k5d 1Q6 Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4k5d 1Q6Nitric oxide synthase, brain 1.14.13.39 0.902
4jsj QJ7Nitric oxide synthase, brain 1.14.13.39 0.792
3ufo HW4Nitric oxide synthase, brain 1.14.13.39 0.777
4jse QJ2Nitric oxide synthase, brain 1.14.13.39 0.772
3tyl AXWNitric oxide synthase, brain 1.14.13.39 0.767
4k5e 1Q7Nitric oxide synthase, brain 1.14.13.39 0.765
3ufp H4WNitric oxide synthase, brain 1.14.13.39 0.764
3nlp JSSNitric oxide synthase, brain 1.14.13.39 0.761
4jsg Q10Nitric oxide synthase, brain 1.14.13.39 0.760
3nlk JSSNitric oxide synthase, brain 1.14.13.39 0.759
4jsh Q15Nitric oxide synthase, brain 1.14.13.39 0.756
3b3p JI7Nitric oxide synthase, brain 1.14.13.39 0.755
3ufr H5WNitric oxide synthase, brain 1.14.13.39 0.755
4jsi Q05Nitric oxide synthase, brain 1.14.13.39 0.754
3nlw 3XFNitric oxide synthase, brain 1.14.13.39 0.751
3tym 08RNitric oxide synthase, brain 1.14.13.39 0.748
3ufq HW5Nitric oxide synthase, brain 1.14.13.39 0.748
3nlv 3XANitric oxide synthase, brain 1.14.13.39 0.744
4imu 1ETNitric oxide synthase, brain 1.14.13.39 0.741
3jws JI4Nitric oxide synthase, brain 1.14.13.39 0.739
3jx0 JI4Nitric oxide synthase, brain 1.14.13.39 0.739
4k5g Q13Nitric oxide synthase, brain 1.14.13.39 0.739
3nlr JRSNitric oxide synthase, brain 1.14.13.39 0.737
3b3o JI3Nitric oxide synthase, brain 1.14.13.39 0.736
4imw 1EVNitric oxide synthase, brain 1.14.13.39 0.736
3jx5 J14Nitric oxide synthase, brain 1.14.13.39 0.735
3e68 AT6Nitric oxide synthase, inducible 1.14.13.39 0.733
4k5f Q14Nitric oxide synthase, brain 1.14.13.39 0.733
4lux QJ8Nitric oxide synthase, brain 1.14.13.39 0.730
3n61 XFJNitric oxide synthase, brain 1.14.13.39 0.727
4eux HW1Nitric oxide synthase, brain 1.14.13.39 0.727
3jx2 JI4Nitric oxide synthase, brain 1.14.13.39 0.725
3n62 XFJNitric oxide synthase, brain 1.14.13.39 0.724
3n5v XFHNitric oxide synthase, brain 1.14.13.39 0.723
3nln JRSNitric oxide synthase, brain 1.14.13.39 0.722
3n5z XFMNitric oxide synthase, brain 1.14.13.39 0.721
4imt 1EWNitric oxide synthase, brain 1.14.13.39 0.719
3n63 XFNNitric oxide synthase, brain 1.14.13.39 0.718
3n5x XFKNitric oxide synthase, brain 1.14.13.39 0.709
3n66 XFNNitric oxide synthase, brain 1.14.13.39 0.705
3nlo JSRNitric oxide synthase, brain 1.14.13.39 0.699
3jwu J11Nitric oxide synthase, brain 1.14.13.39 0.691
1m9j CLWNitric oxide synthase, endothelial 1.14.13.39 0.690
4ug9 1EWNitric oxide synthase oxygenase 1.14.13.165 0.687
3jx4 J11Nitric oxide synthase, brain 1.14.13.39 0.678
3n60 XFNNitric oxide synthase, brain 1.14.13.39 0.678
3dqr JI2Nitric oxide synthase, brain 1.14.13.39 0.676
3n5y XFLNitric oxide synthase, brain 1.14.13.39 0.676
4uga Q05Nitric oxide synthase oxygenase 1.14.13.165 0.669
4jsf QJ4Nitric oxide synthase, brain 1.14.13.39 0.668
4cx4 HW9Nitric oxide synthase, brain 1.14.13.39 0.666
4ug7 1EVNitric oxide synthase oxygenase 1.14.13.165 0.656
4ug5 XFKNitric oxide synthase oxygenase 1.14.13.165 0.655