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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4k0t D9Z Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.894
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.825
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.825
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.774
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.762
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.758
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.754
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.748
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.747
4uov AZMCarbonate dehydratase / 0.747
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.746
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.740
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.735
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.727
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.725
4xiw AZMCarbonic anhydrase, alpha type / 0.724
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.721
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.720
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.719
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.717
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.717
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.717
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.716
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.716
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.713
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.709
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.708
1okm SABCarbonic anhydrase 2 4.2.1.1 0.707
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.707
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.706
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.705
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.703
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.702
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.702
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.702
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.699
1bzm MZMCarbonic anhydrase 1 4.2.1.1 0.698
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.698
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.698
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.696
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.694
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.694
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.693
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.693
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.689
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.688
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.683
3myq E27Carbonic anhydrase 2 4.2.1.1 0.682
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.679
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.679
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.678
1i9p IOECarbonic anhydrase 2 4.2.1.1 0.676
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.676
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.676
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.674
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.674
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.672
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.671
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.667
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.667
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.665
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.665
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.664
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.664
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.663
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.662
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.662
4knm E1ECarbonic anhydrase 13 4.2.1.1 0.661
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.660
2wd2 MS5Carbonic anhydrase 2 4.2.1.1 0.656
3bl1 BL1Carbonic anhydrase 2 4.2.1.1 0.656
3oik WZBCarbonic anhydrase 2 4.2.1.1 0.656
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.655
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.654
4bf1 9FKCarbonic anhydrase 2 4.2.1.1 0.652
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.651
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.650
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.650
3sax E50Carbonic anhydrase 2 4.2.1.1 0.650