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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jvq 1ML Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4jvq 1MLGenome polyprotein 2.7.7.48 1.154
4eo8 0S3Genome polyprotein 2.7.7.48 0.801
3mf5 HJZGenome polyprotein 2.7.7.48 0.773
2gir NN3Genome polyprotein 2.7.7.48 0.754
4ju6 1O6Genome polyprotein 2.7.7.48 0.730
4ju7 1O6Genome polyprotein 2.7.7.48 0.730
2d3u CCTPolyprotein / 0.712
4ju1 1NZGenome polyprotein 2.7.7.48 0.689
4jtz 1NWGenome polyprotein 2.7.7.48 0.672
2hai PFIPolyprotein / 0.659
4jju 1MBGenome polyprotein 2.7.7.48 0.659
4jtw 1NUGenome polyprotein 2.7.7.48 0.656
2o5d VR1Genome polyprotein 2.7.7.48 0.653
4j0a 1JLGenome polyprotein 2.7.7.48 0.653