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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jta NAP Voltage-gated potassium channel subunit beta-2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4jta NAPVoltage-gated potassium channel subunit beta-2 / 1.379
2r9r NAPVoltage-gated potassium channel subunit beta-2 / 1.372
3lnm NAPVoltage-gated potassium channel subunit beta-2 / 1.198
3lut NAPVoltage-gated potassium channel subunit beta-2 / 1.054
1qrq NDPVoltage-gated potassium channel subunit beta-2 / 0.973
1lqa NDPProtein tas / 0.962
4jtc NAPVoltage-gated potassium channel subunit beta-2 / 0.951
4jtd NAPVoltage-gated potassium channel subunit beta-2 / 0.946
4aub NAPL-glyceraldehyde 3-phosphate reductase 1.1.1 0.860
2c91 NAPAflatoxin B1 aldehyde reductase member 2 / 0.825
1gve NAPAflatoxin B1 aldehyde reductase member 3 1 0.811
2bp1 NDPAflatoxin B1 aldehyde reductase member 2 / 0.805
2clp NDPAflatoxin B1 aldehyde reductase member 3 / 0.763
1vp5 NAPOxidoreductase, aldo/keto reductase family / 0.759
1pz1 NAPGeneral stress protein 69 / 0.753
4xzm NAPAldo-keto reductase family 1 member B10 1.1.1 0.753
1mi3 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.743
2hej NDPAldo-keto reductase family 1 member C21 1.1.1 0.743
4xo7 NAPAldo-keto reductase family 1 member C2 / 0.733
3buv NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.729
3bv7 NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.729
1m9h NAD2,5-diketo-D-gluconic acid reductase A 1.1.1.346 0.722
3caq NDP3-oxo-5-beta-steroid 4-dehydrogenase / 0.716
4jtq NAPAldo-keto reductase family 1 member C2 / 0.713
1q5m NDPProstaglandin-E(2) 9-reductase 1.1.1.189 0.708
4xzn NAPAldo-keto reductase family 1 member B10 1.1.1 0.708
3ln3 NADAldo-keto reductase family 1 member C13 / 0.706
1sm9 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.704
3qkz NAPAldose reductase-related protein 1 1.1.1.21 0.699
4jq3 NAPAldo-keto reductase family 1 member C2 / 0.699
2fvl NAPAldo-keto reductase family 1 member C4 1.1.1.225 0.695
4pmj NAPPutative oxidoreductase / 0.691
4l1x NAPAldo-keto reductase family 1 member C2 / 0.682
1ye6 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.678
2he5 NDPAldo-keto reductase family 1 member C21 1.1.1 0.677
1lwi NAP3-alpha-hydroxysteroid dehydrogenase 1.1.1.50 0.676
1pz0 NAPProtein IolS 1.1.1 0.676
1og6 NAPOxidoreductase YdhF 1 0.671
1s1r NAPAldo-keto reductase family 1 member C3 / 0.671
3h7r NAPAldo-keto reductase family 4 member C8 / 0.668
1ye6 NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.667
1ye4 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.665
4dz5 NAPAldo-keto reductase family 1 member C3 / 0.657
1s1p NAPAldo-keto reductase family 1 member C3 / 0.656
3h7u NAPNADPH-dependent aldo-keto reductase, chloroplastic / 0.655
2bgs NDPAldose reductase 1.1.1.21 0.654
1ads NAPAldose reductase 1.1.1.21 0.653
3wbw NDPPutative 2,5-diketo-D-gluconic acid reductase / 0.651