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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jf1 PLP Acetylornithine/succinyldiaminopimelate aminotransferase 2.6.1.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4jf1 PLPAcetylornithine/succinyldiaminopimelate aminotransferase 2.6.1.11 0.914
4jey PLPAcetylornithine/succinyldiaminopimelate aminotransferase 2.6.1.11 0.873
4adc PLPSuccinylornithine transaminase 2.6.1.81 0.783
1s07 PLPAdenosylmethionine-8-amino-7-oxononanoate aminotransferase 2.6.1.62 0.721
1wkh PPE[LysW]-aminoadipate semialdehyde transaminase / 0.718
4zm3 PLPAminotransferase / 0.717
4ba5 PXGProbable aminotransferase / 0.715
2hp2 KE4Glutamate-1-semialdehyde 2,1-aminomutase 5.4.3.8 0.709
2oat PFMOrnithine aminotransferase, mitochondrial 2.6.1.13 0.705
4aoa IK2Beta-phenylalanine transaminase 2.6.1 0.700
3zrr PXGSerine-pyruvate aminotransferase (AgxT) / 0.686
2ykv IK2Beta-transaminase / 0.685
2gmu PDGPutative pyridoxamine 5-phosphate-dependent dehydrase / 0.683
4ao4 PLKBeta-transaminase / 0.683
5k8b PDG8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase / 0.682
1b9i PXG3-amino-5-hydroxybenzoate synthase 4.2.1.144 0.676
1mlz PLPAdenosylmethionine-8-amino-7-oxononanoate aminotransferase 2.6.1.62 0.676
2pb2 PLPAcetylornithine/succinyldiaminopimelate aminotransferase 2.6.1.11 0.675
3tfu PL8Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2.6.1.62 0.671
4zwm PLPOrnithine aminotransferase, mitochondrial, putative / 0.669
2gms P0PPutative pyridoxamine 5-phosphate-dependent dehydrase / 0.668
3b8x G4MPutative pyridoxamine 5-phosphate-dependent dehydrase / 0.664
1cl2 PPGCystathionine beta-lyase MetC 4.4.1.8 0.663
1o69 X04Aminotransferase DegT / 0.657
4itx IN5Cystathionine beta-lyase MetC 4.4.1.8 0.655
4ge7 0K5Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.654
4geb 0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.654
1u08 PLPMethionine aminotransferase / 0.653
3mau PLRPutative sphingosine-1-phosphate lyase / 0.652