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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4je5 PLP Aromatic/aminoadipate aminotransferase 1 2.6.1.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4je5 PLPAromatic/aminoadipate aminotransferase 1 2.6.1.39 0.987
4emy PLPAminotransferase class I and II / 0.734
1c7o PPGHemolysin / 0.729
3ei8 PL5LL-diaminopimelate aminotransferase, chloroplastic / 0.723
3qpg 3QPAspartate aminotransferase 2.6.1.1 0.712
4dbc 3QPAspartate aminotransferase 2.6.1.1 0.708
4wlj IK2Kynurenine--oxoglutarate transaminase 1 2.6.1.7 0.702
1cq7 PY5Aspartate aminotransferase 2.6.1.1 0.700
4w5k PLPAspartate aminotransferase, mitochondrial / 0.700
4ge7 0K5Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.698
4geb 0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.696
1x28 PGUAspartate aminotransferase 2.6.1.1 0.689
1akb PPDAspartate aminotransferase, mitochondrial 2.6.1.1 0.688
3ele PLPAminotransferase / 0.685
1oxo IK2Aspartate aminotransferase, mitochondrial 2.6.1.1 0.674
1u08 PLPMethionine aminotransferase / 0.673
4gdy 0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.672
1cq8 PY6Aspartate aminotransferase 2.6.1.1 0.669
1arg PPDAspartate aminotransferase 2.6.1.1 0.664
1cq6 PY4Aspartate aminotransferase 2.6.1.1 0.660
1akc PPEAspartate aminotransferase, mitochondrial 2.6.1.1 0.657
1arh PPDAspartate aminotransferase 2.6.1.1 0.657
1aka PLPAspartate aminotransferase, mitochondrial 2.6.1.1 0.656
1maq PGUAspartate aminotransferase, mitochondrial 2.6.1.1 0.656
4ge4 0KEKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.652