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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jbt ASD Cytochrome P450 monooxygenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4jbt ASDCytochrome P450 monooxygenase / 0.935
4j6d TESCytochrome P450 monooxygenase / 0.890
4j6c STRCytochrome P450 monooxygenase / 0.758
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
4j6b PLOCytochrome P450 monooxygenase / 0.730
1kdm DHTSex hormone-binding globulin / 0.696
1kdk DHTSex hormone-binding globulin / 0.690
3bur TES3-oxo-5-beta-steroid 4-dehydrogenase / 0.690
1qyx ASDEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.689
1d2s DHTSex hormone-binding globulin / 0.676
3ruk AERSteroid 17-alpha-hydroxylase/17,20 lyase / 0.666
1yb1 AOIEstradiol 17-beta-dehydrogenase 11 1.1.1.62 0.663
4lxj LANLanosterol 14-alpha demethylase 1.14.13.70 0.661
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1xf0 ASDAldo-keto reductase family 1 member C3 / 0.658
3bej MUFBile acid receptor / 0.655
1zhw HC2Oxysterol-binding protein homolog 4 / 0.654
2hrc CHDFerrochelatase, mitochondrial 4.99.1.1 0.654
3w1w CHDFerrochelatase, mitochondrial 4.99.1.1 0.654
4y8w STRSteroid 21-hydroxylase / 0.654
1ot7 IU5Bile acid receptor / 0.652