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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jaj XU1 Aurora kinase A 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4jaj XU1Aurora kinase A 2.7.11.1 0.815
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1zys 199Serine/threonine-protein kinase Chk1 2.7.11.1 0.687
4fsz HK8Serine/threonine-protein kinase Chk1 2.7.11.1 0.686
2vgp AD6Aurora kinase B-A 2.7.11.1 0.681
4fsy HK7Serine/threonine-protein kinase Chk1 2.7.11.1 0.680
4bdi HAUSerine/threonine-protein kinase Chk2 2.7.11.1 0.677
3tkh 07SSerine/threonine-protein kinase Chk1 2.7.11.1 0.672
4bie IE6Mitogen-activated protein kinase kinase kinase 5 2.7.11.25 0.667
4gh2 HK0Serine/threonine-protein kinase Chk1 2.7.11.1 0.666
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.661
2wmw ZYWSerine/threonine-protein kinase Chk1 2.7.11.1 0.660
3tki S25Serine/threonine-protein kinase Chk1 2.7.11.1 0.658
4ftr 5HKSerine/threonine-protein kinase Chk1 2.7.11.1 0.656
4fsw HK6Serine/threonine-protein kinase Chk1 2.7.11.1 0.655
2wmx ZY6Serine/threonine-protein kinase Chk1 2.7.11.1 0.653
2cgx 3D3Serine/threonine-protein kinase Chk1 2.7.11.1 0.652
4ft0 HK9Serine/threonine-protein kinase Chk1 2.7.11.1 0.651
1qpd STUTyrosine-protein kinase Lck 2.7.10.2 0.650