Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4j5r A1R O-acetyl-ADP-ribose deacetylase 1 3.5.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4j5r A1RO-acetyl-ADP-ribose deacetylase 1 3.5.1 0.929
5fsy AR6Uncharacterized protein / 0.742
2fav APRNonstructural polyprotein pp1a / 0.731
5cb3 APRO-acetyl-ADP-ribose deacetylase / 0.716
3gqo APRNon-structural polyprotein / 0.710
2bfq AR6[Protein ADP-ribosylglutamate] hydrolase AF_1521 3.2.2 0.699
3ewr APRReplicase polyprotein 1a 3.4.22 0.695
3sig AR6Uncharacterized protein / 0.688
4na4 A1RPoly(ADP-ribose) glycohydrolase 3.2.1.143 0.685
5fsx ADPUncharacterized protein / 0.673
2bfr ADP[Protein ADP-ribosylglutamate] hydrolase AF_1521 3.2.2 0.670
4b1h AR6Poly(ADP-ribose) glycohydrolase 3.2.1.143 0.665
3v2b AR6Poly [ADP-ribose] polymerase 15 2.4.2.30 0.659
3sii A1RUncharacterized protein / 0.652