Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4iwy ADP Ribosomal protein S6--L-glutamate ligase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4iwy ADPRibosomal protein S6--L-glutamate ligase / 0.928
4iwx ADPRibosomal protein S6--L-glutamate ligase / 0.718
1z2p ACPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.693
1px2 ATPSynapsin-1 / 0.689
1pk8 ATPSynapsin-1 / 0.687
4ffl ADPUncharacterized protein / 0.687
2zdg ADPD-alanine--D-alanine ligase / 0.686
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.683
4fu0 ADPD-alanine--D-alanine ligase / 0.681
3g8d ADPBiotin carboxylase 6.3.4.14 0.676
3q1k ADPD-alanine--D-alanine ligase A 6.3.2.4 0.676
4ffr ATPUncharacterized protein / 0.673
5cns DATRibonucleoside-diphosphate reductase 1 subunit alpha 1.17.4.1 0.670
3r5f ATPD-alanine--D-alanine ligase / 0.669
2r86 ATP5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase / 0.664
4ffm ADPUncharacterized protein / 0.663
3tw6 ADPPyruvate carboxylase / 0.662
1z2n ADPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.661
3t99 ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.654
4q4c ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.654
2p0a ANPSynapsin-3 / 0.651