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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4iwx ADP Ribosomal protein S6--L-glutamate ligase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4iwx ADPRibosomal protein S6--L-glutamate ligase / 0.900
4iwy ADPRibosomal protein S6--L-glutamate ligase / 0.718
1pk8 ATPSynapsin-1 / 0.699
1px2 ATPSynapsin-1 / 0.696
4c5c ATPD-alanine--D-alanine ligase B 6.3.2.4 0.686
3g8d ADPBiotin carboxylase 6.3.4.14 0.684
1z2p ACPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.681
3lmh ADPMyosin heavy chain kinase A 2.7.11.7 0.679
4ffr ATPUncharacterized protein / 0.679
4zs4 ATPMyosin heavy chain kinase A 2.7.11.7 0.672
5e9e ANPMyosin heavy chain kinase A 2.7.11.7 0.670
1z2n ADPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.669
4fu0 ADPD-alanine--D-alanine ligase / 0.669
4ffm ADPUncharacterized protein / 0.667
1dv2 ATPBiotin carboxylase 6.3.4.14 0.664
2wq7 FADRE11660p / 0.662
2zdg ADPD-alanine--D-alanine ligase / 0.661
3i12 ADPD-alanine--D-alanine ligase A 6.3.2.4 0.661
5byl GCPBifunctional AAC/APH 2.3.1 0.661
3cvu FADRE11660p / 0.660
1o6y ACPSerine/threonine-protein kinase PknB 2.7.11.1 0.659
3q1k ADPD-alanine--D-alanine ligase A 6.3.2.4 0.659
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.659
3tw6 ADPPyruvate carboxylase / 0.657
5c1p ADPD-alanine--D-alanine ligase / 0.657
4pl9 ADPEthylene receptor 1 / 0.656
1zar ADPRIO-type serine/threonine-protein kinase Rio2 2.7.11.1 0.655
3wo1 ADPAlanine--anticapsin ligase / 0.655
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.654
3cvy FADRE11660p / 0.654
4jqe ANPCasein kinase II subunit alpha 2.7.11.1 0.653
5iqb GNPBifunctional AAC/APH 2.3.1 0.653
1jkl ANPDeath-associated protein kinase 1 2.7.11.1 0.651
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.651
4uxx ACPDiacylglycerol kinase 2.7.1.107 0.651
4q4c ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.650