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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4iwc 1GV Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4iwc 1GVEstrogen receptor / 1.029
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.715
1u3s 797Estrogen receptor beta / 0.695
3erd DESEstrogen receptor / 0.686
1zky 689Estrogen receptor / 0.672
2fzk CTPAspartate carbamoyltransferase regulatory chain / 0.665
4pp6 STLEstrogen receptor / 0.651
2gpu OHTEstrogen-related receptor gamma / 0.650
2jf9 OHTEstrogen receptor / 0.650