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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4iv4 1GS Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4iv4 1GSEstrogen receptor / 1.111
4iu7 1GMEstrogen receptor / 0.875
2bj4 OHTEstrogen receptor / 0.797
2jf9 OHTEstrogen receptor / 0.787
4iw6 1GUEstrogen receptor / 0.785
1uom PTIEstrogen receptor / 0.778
1xqc AEJEstrogen receptor / 0.756
4zn7 DESEstrogen receptor / 0.742
2qe4 JJ3Estrogen receptor / 0.734
2q70 DC8Estrogen receptor / 0.728
1l2i ETCEstrogen receptor / 0.723
2qgt EEDEstrogen receptor / 0.719
3erd DESEstrogen receptor / 0.716
1yin CM3Estrogen receptor / 0.715
3ert OHTEstrogen receptor / 0.713
1err RALEstrogen receptor / 0.701
2ayr L4GEstrogen receptor / 0.697
4ivy 1GTEstrogen receptor / 0.693
4ivw 1GJEstrogen receptor / 0.691
5dx3 ESTEstrogen receptor / 0.684
1xp9 AIJEstrogen receptor / 0.683
1s9p DESEstrogen-related receptor gamma / 0.682
1x7e 244Estrogen receptor / 0.676
4e5l DBHPolymerase acidic protein / 0.675
2jfa RALEstrogen receptor / 0.674
1x7j GENEstrogen receptor beta / 0.673
1sj0 E4DEstrogen receptor / 0.672
1gwq ZTWEstrogen receptor / 0.670
4e5f 0N7Polymerase acidic protein / 0.664
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
1yim CM4Estrogen receptor / 0.656