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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4iu7 1GM Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4iu7 1GMEstrogen receptor / 1.141
4iw6 1GUEstrogen receptor / 0.997
4ivw 1GJEstrogen receptor / 0.990
4iv4 1GSEstrogen receptor / 0.875
2bj4 OHTEstrogen receptor / 0.802
2jf9 OHTEstrogen receptor / 0.751
2q70 DC8Estrogen receptor / 0.737
1uom PTIEstrogen receptor / 0.709
1yim CM4Estrogen receptor / 0.707
1gwq ZTWEstrogen receptor / 0.702
1s9q OHTEstrogen-related receptor gamma / 0.687
1x76 697Estrogen receptor beta / 0.685
1x7b 041Estrogen receptor beta / 0.685
2qe4 JJ3Estrogen receptor / 0.669
1sj0 E4DEstrogen receptor / 0.668
3erd DESEstrogen receptor / 0.666
4dma 0L8Estrogen receptor / 0.665
4e5f 0N7Polymerase acidic protein / 0.662
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
2gpv OHTEstrogen-related receptor gamma / 0.660
1zky 689Estrogen receptor / 0.653
2baq PQBMitogen-activated protein kinase 14 / 0.652
1err RALEstrogen receptor / 0.650