Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ite TEY Vitamin D3 receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ite TEYVitamin D3 receptor / 1.618
4itf TFYVitamin D3 receptor / 1.479
2ham C33Vitamin D3 receptor / 1.380
2has C3OVitamin D3 receptor / 1.368
2hb8 MVDVitamin D3 receptor / 1.331
2hb7 O1CVitamin D3 receptor / 1.325
2har OCCVitamin D3 receptor / 1.302
1db1 VDXVitamin D3 receptor / 1.235
3m7r VDXVitamin D3 receptor / 1.217
1ie8 KH1Vitamin D3 receptor / 1.215
3a78 3EVVitamin D3 receptor / 1.208
1rk3 VDXVitamin D3 receptor / 1.198
1ie9 VDXVitamin D3 receptor / 1.160
3vt7 VDXVitamin D3 receptor / 1.157
1s19 MC9Vitamin D3 receptor / 1.140
3kpz ZNEVitamin D3 receptor / 1.130
2hc4 VDXVitamin D3 receptor A / 1.115
1s0z EB1Vitamin D3 receptor / 1.099
2zlc VDXVitamin D3 receptor / 1.094
3vt3 VDXVitamin D3 receptor / 1.088
1rkh VD2Vitamin D3 receptor / 1.052
4ruj VDXVitamin D3 receptor A / 1.036
2hbh XE4Vitamin D3 receptor A / 1.012
4ruo BIVVitamin D3 receptor A / 0.979
4rup H97Vitamin D3 receptor A / 0.978
2hcd BIVVitamin D3 receptor A / 0.976
3vrt YS2Vitamin D3 receptor / 0.921
4ia2 BIVVitamin D3 receptor A / 0.901
3vt6 5YIVitamin D3 receptor / 0.894
4ia7 BIVVitamin D3 receptor A / 0.891
3vtb TKAVitamin D3 receptor / 0.871
2o4j VD4Vitamin D3 receptor / 0.858
3w0a DS5Vitamin D3 receptor / 0.842
3vru YS3Vitamin D3 receptor / 0.831
2o4r VD5Vitamin D3 receptor / 0.830
2zl9 VDAVitamin D3 receptor / 0.825
4ia3 BIVVitamin D3 receptor A / 0.825
3vrv YSDVitamin D3 receptor / 0.819
3vt8 YI3Vitamin D3 receptor / 0.818
4ia1 BIVVitamin D3 receptor A / 0.812
1rjk VDZVitamin D3 receptor / 0.810
3w0c 6DSVitamin D3 receptor / 0.805
3dr1 C5DVitamin D3 receptor A / 0.787
3vrw YS5Vitamin D3 receptor / 0.772
2zla VDBVitamin D3 receptor / 0.764
3vt5 YI2Vitamin D3 receptor / 0.764
3vt9 YI4Vitamin D3 receptor / 0.735
3vtc TK3Vitamin D3 receptor / 0.724
3vt4 5YIVitamin D3 receptor / 0.694
3w0j T08Vitamin D3 receptor / 0.668