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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4isg 1FY Glucokinase 2.7.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4isg 1FYGlucokinase 2.7.1.2 1.119
4isf 1FXGlucokinase 2.7.1.2 0.822
4ise 1FWGlucokinase 2.7.1.2 0.768
4dch 4DCGlucokinase 2.7.1.2 0.719
3imx B84Glucokinase 2.7.1.2 0.690
3vf6 0H6Glucokinase 2.7.1.2 0.682