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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4irn FAD AnaB

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4irn FADAnaB / 1.229
3owa FADAcyl-CoA dehydrogenase / 0.807
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.797
2pg0 FADAcyl-CoA dehydrogenase / 0.784
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.782
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.781
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.772
2a1t FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.760
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.749
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.749
2dvl FADAcyl-CoA dehydrogenase / 0.738
2vig FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 0.736
4m9a FDAAcyl-CoA dehydrogenase / 0.735
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.731
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.730
5ahs FADAcyl-CoA dehydrogenase / 0.725
2pr5 FMNBlue-light photoreceptor / 0.724
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.723
5jsc FADPutative acyl-CoA dehydrogenase / 0.719
4hj3 FMNLOV protein / 0.714
1u8v FAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase / 0.713
4hh0 FMNAppA protein / 0.710
3oib FDAPutative acyl-CoA dehydrogenase / 0.707
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.705
5af7 FADAcyl-CoA dehydrogenase / 0.700
2bkj FMNNADPH-flavin oxidoreductase / 0.699
2eba FADPutative glutaryl-CoA dehydrogenase / 0.695
2d29 FADAcyl-CoA dehydrogenase / 0.693
4j57 FADThioredoxin reductase 2 1.8.1.9 0.688
4kto FADPutative isovaleryl-CoA dehydrogenase protein / 0.686
3hjk FADVivid PAS protein VVD / 0.683
4hia FMNLOV protein / 0.682
4hj4 FMNLOV protein / 0.682
1zk7 FADMercuric reductase 1.16.1.1 0.681
4h4u FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.680
1ege FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.679
3lsi FADPyranose 2-oxidase / 0.679
4hj6 FMNLOV protein / 0.678
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.677
1zmd FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.676
4yus FMNFamily 3 adenylate cyclase / 0.676
1n07 FMNRiboflavin kinase 2.7.1.26 0.675
4eep FMNPhototropin-2 2.7.11.1 0.674
3r7k FDAProbable acyl CoA dehydrogenase / 0.671
4kuk RBFPutative blue-light photoreceptor / 0.671
1t9g FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.670
4kuo RBFPutative blue-light photoreceptor / 0.668
3dk4 FADGlutathione reductase, mitochondrial 1.8.1.7 0.667
2igo FADPyranose 2-oxidase / 0.665
3dgz FADThioredoxin reductase 2, mitochondrial 1.8.1.9 0.664
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.664
1s4m LUMRiboflavin biosynthesis protein / 0.661
2hq9 FADMll6688 protein / 0.661
3is2 FADVivid PAS protein VVD / 0.658
4ees FMNPhototropin-2 2.7.11.1 0.658
5kbw RBFRiboflavin transporter RibU / 0.658
2jk6 FADTrypanothione reductase / 0.657
2hfn FMNActivator of photopigment and puc expression / 0.656
1vcf FMNIsopentenyl-diphosphate delta-isomerase / 0.655
2ign FADPyranose 2-oxidase / 0.655
1bzl FADTrypanothione reductase 1.8.1.12 0.654
2ix5 FADAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.653
2yqu FADDihydrolipoyl dehydrogenase / 0.653
2z6d FMNPhototropin-2 2.7.11.1 0.653
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.653
1kyv RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.652
3ad9 FADSubunit beta of sarcosine oxidase / 0.652
3d72 FADVivid PAS protein VVD / 0.652
5i39 FADL-amino acid deaminase / 0.652
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.651
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.650
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.650
4eer FMNPhototropin-2 2.7.11.1 0.650