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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4iql FMN Enoyl-(Acyl-carrier-protein) reductase II

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 1.199
2z6i FMN2-nitropropane dioxygenase / 1.017
1lm1 FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.853
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.826
2nli FMNLactate oxidase / 0.818
1llw FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.814
1ofe FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.808
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.792
2zfa FMNLactate oxidase / 0.791
3l5l FMNXenobiotic reductase / 0.770
4utm FNRXenobiotic reductase / 0.767
1llz FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.764
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.764
1ea0 FMNGlutamate synthase [NADPH] large chain 1.4.1.13 0.763
1kbi FMNCytochrome b2, mitochondrial 1.1.2.3 0.762
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.761
3gr8 FMNNADPH dehydrogenase / 0.759
2h8x FMNXenA / 0.758
5ebu FMNLactate oxidase / 0.758
4q4k FMNUncharacterized protein / 0.757
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.756
4utk FNRXenobiotic reductase / 0.755
5cpm FNRNADH:flavin oxidoreductase / 0.755
4uth FMNXenobiotic reductase / 0.754
4utl FNRXenobiotic reductase / 0.754
1z48 FMNNADPH dehydrogenase / 0.750
2du2 FMNLactate oxidase / 0.750
3bw3 FMNPutative 2-nitropropane dioxygenase / 0.750
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.749
3n14 FMNXenobiotic reductase / 0.749
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.749
2e77 FMNLactate oxidase / 0.746
2j6x FMNLactate oxidase / 0.746
4rje FNRLactate oxidase / 0.745
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.744
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.743
3hf3 FMNChromate reductase / 0.742
3tjl FMNNADPH dehydrogenase / 0.737
4yco FMNtRNA-dihydrouridine(16) synthase / 0.735
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.734
4m5p FMNNADPH dehydrogenase / 0.733
4cw5 FMNDfnA / 0.731
1gox FMNPeroxisomal (S)-2-hydroxy-acid oxidase 1.1.3.15 0.727
3bw2 FMNPutative 2-nitropropane dioxygenase / 0.725
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.722
3bw4 FMNPutative 2-nitropropane dioxygenase / 0.720
3gka FMNN-ethylmaleimide reductase / 0.718
4yx6 FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.717
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.713
2djl FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.710
3l67 FMNXenobiotic reductase / 0.710
1jub FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.708
3p82 FMNPentaerythritol tetranitrate reductase / 0.708
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.708
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.706
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.705
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 0.705
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.705
3gye FMNDihydroorotate dehydrogenase (fumarate) / 0.704
1jue FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.702
1z44 FMNNADPH dehydrogenase / 0.702
4rnv FMNNADPH dehydrogenase 1 1.6.99.1 0.702
3oix FMNDihydroorotate dehydrogenase / 0.701
3p74 FMNPentaerythritol tetranitrate reductase / 0.697
2bsl FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.695
3b05 FNRIsopentenyl-diphosphate delta-isomerase / 0.695
1h7w FMNDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.694
3f03 FMNPentaerythritol tetranitrate reductase / 0.694
3p67 FMNPentaerythritol tetranitrate reductase / 0.692
3p84 FMNPentaerythritol tetranitrate reductase / 0.691
3p8j FMNPentaerythritol tetranitrate reductase / 0.691
3n19 FNRXenobiotic reductase / 0.690
3p62 FMNPentaerythritol tetranitrate reductase / 0.689
2gjn FMNNitronate monooxygenase 1.13.12.16 0.688
4qai FMNNADPH dehydrogenase / 0.688
4wzh FMNDihydroorotate dehydrogenase (fumarate) / 0.688
4ef9 FMNDihydroorotate dehydrogenase (fumarate) / 0.687
4df2 FMNNADPH dehydrogenase / 0.680
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.679
1szg FNSCytochrome b2, mitochondrial 1.1.2.3 0.676
3kru FMNNADH:flavin oxidoreductase/NADH oxidase / 0.676
1dor FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.675
3aty FMNProstaglandin F2a synthase / 0.672
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.670
4e2b FMNDehydrogenase / 0.670
4ef8 FMNDihydroorotate dehydrogenase (fumarate) / 0.669
1ep3 FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit 1.3.1.14 0.666
4yl2 FMNLactate oxidase / 0.665
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.664
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.663
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.662
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.662
2eba FADPutative glutaryl-CoA dehydrogenase / 0.662
1qcw FNSCytochrome b2, mitochondrial 1.1.2.3 0.658
2c12 FADNitroalkane oxidase 1.7.3.1 0.658
4h6p FMNChromate reductase / 0.658
1vyr FMNPentaerythritol tetranitrate reductase / 0.657
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.656
5a89 FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.656
1h51 FMNPentaerythritol tetranitrate reductase / 0.655
2b3d FADModulator of drug activity B / 0.655
1vhn FMNtRNA-dihydrouridine synthase / 0.654
2abb FMNPentaerythritol tetranitrate reductase / 0.654
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.651