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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ih7 1ER Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ih7 1ERGenome polyprotein 2.7.7.48 0.837
4mka 2AYGenome polyprotein 2.7.7.48 0.761
4mk9 28RGenome polyprotein 2.7.7.48 0.755
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4mk7 28OGenome polyprotein 2.7.7.48 0.709
4mk8 28QGenome polyprotein 2.7.7.48 0.701
4ih6 1EPGenome polyprotein 2.7.7.48 0.692
4e5f 0N7Polymerase acidic protein / 0.660