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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4iae 1DX Alr2278 protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4iae 1DXAlr2278 protein / 1.721
4iah 1DXAlr2278 protein / 1.166
4jqh 1MFAlr2278 protein / 1.107
3l6j Z90Alr2278 protein / 1.055
4f9m FCMPeroxisome proliferator-activated receptor gamma / 0.656
4c49 HCYCorticosteroid-binding globulin / 0.652
3qem QEMGlutamate receptor ionotropic, NMDA 2B / 0.651
3qem QEMNMDA glutamate receptor subunit / 0.651