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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ia1 BIV Vitamin D3 receptor A

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ia1 BIVVitamin D3 receptor A / 1.585
4ia3 BIVVitamin D3 receptor A / 1.323
4ia2 BIVVitamin D3 receptor A / 1.302
4ia7 BIVVitamin D3 receptor A / 1.195
2hcd BIVVitamin D3 receptor A / 1.124
3dr1 C5DVitamin D3 receptor A / 1.087
4ruo BIVVitamin D3 receptor A / 1.053
3vtc TK3Vitamin D3 receptor / 1.046
2hbh XE4Vitamin D3 receptor A / 1.042
4rup H97Vitamin D3 receptor A / 1.036
4ruj VDXVitamin D3 receptor A / 1.035
2hc4 VDXVitamin D3 receptor A / 1.013
3kpz ZNEVitamin D3 receptor / 1.013
2o4j VD4Vitamin D3 receptor / 1.011
1rkh VD2Vitamin D3 receptor / 1.008
1rkg VD1Vitamin D3 receptor / 1.003
3vtb TKAVitamin D3 receptor / 0.994
3vt3 VDXVitamin D3 receptor / 0.993
3vt8 YI3Vitamin D3 receptor / 0.990
1s19 MC9Vitamin D3 receptor / 0.979
1rjk VDZVitamin D3 receptor / 0.974
1ie9 VDXVitamin D3 receptor / 0.941
3vru YS3Vitamin D3 receptor / 0.922
3vt7 VDXVitamin D3 receptor / 0.914
2zl9 VDAVitamin D3 receptor / 0.902
4itf TFYVitamin D3 receptor / 0.901
1ie8 KH1Vitamin D3 receptor / 0.876
3a78 3EVVitamin D3 receptor / 0.861
2zla VDBVitamin D3 receptor / 0.854
3vrt YS2Vitamin D3 receptor / 0.850
3vt6 5YIVitamin D3 receptor / 0.837
1txi TX5Vitamin D3 receptor / 0.836
4ite TEYVitamin D3 receptor / 0.812
2hb8 MVDVitamin D3 receptor / 0.791
1rk3 VDXVitamin D3 receptor / 0.789
3vt5 YI2Vitamin D3 receptor / 0.768
1db1 VDXVitamin D3 receptor / 0.766
2hb7 O1CVitamin D3 receptor / 0.716
2o4r VD5Vitamin D3 receptor / 0.707
1s0z EB1Vitamin D3 receptor / 0.692
2har OCCVitamin D3 receptor / 0.691
2ham C33Vitamin D3 receptor / 0.688
2zlc VDXVitamin D3 receptor / 0.673
3vrv YSDVitamin D3 receptor / 0.667
3m7r VDXVitamin D3 receptor / 0.660
2has C3OVitamin D3 receptor / 0.658
3w5r LOAVitamin D3 receptor / 0.658