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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4i0i 957 Beta-secretase 1 3.4.23.46

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3nsh 957Beta-secretase 1 3.4.23.46 1.202
4i0i 957Beta-secretase 1 3.4.23.46 1.202
4ewo 996Beta-secretase 1 3.4.23.46 1.022
3qi1 C6ABeta-secretase 1 3.4.23.46 1.018
4exg 916Beta-secretase 1 3.4.23.46 0.992
4i0h 1BLBeta-secretase 1 3.4.23.46 0.980
3k5c 0BIBeta-secretase 1 3.4.23.46 0.967
4dus 0MPBeta-secretase 1 3.4.23.46 0.950
2p83 MR0Beta-secretase 1 3.4.23.46 0.944
3cib 314Beta-secretase 1 3.4.23.46 0.937
2vie VG0Beta-secretase 1 3.4.23.46 0.929
2iqg F2IBeta-secretase 1 3.4.23.46 0.925
2vnm CM8Beta-secretase 1 3.4.23.46 0.922
2wf0 ZY0Beta-secretase 1 3.4.23.46 0.916
4ke0 1R8Beta-secretase 1 3.4.23.46 0.908
2vnn CM7Beta-secretase 1 3.4.23.46 0.904
2vj6 VG5Beta-secretase 1 3.4.23.46 0.901
2xfj VG5Beta-secretase 1 3.4.23.46 0.900
2viz VG4Beta-secretase 1 3.4.23.46 0.896
2b8v 3BNBeta-secretase 1 3.4.23.46 0.895
2xfi XFIBeta-secretase 1 3.4.23.46 0.895
3cic 316Beta-secretase 1 3.4.23.46 0.881
2wf2 ZY2Beta-secretase 1 3.4.23.46 0.880
3k5g BJCBeta-secretase 1 3.4.23.46 0.875
3cid 318Beta-secretase 1 3.4.23.46 0.874
2vij C44Beta-secretase 1 3.4.23.46 0.873
3veu 0GOBeta-secretase 1 3.4.23.46 0.871
2hm1 LIQBeta-secretase 1 3.4.23.46 0.869
4dh6 0KNBeta-secretase 1 3.4.23.46 0.867
2xfk AA9Beta-secretase 1 3.4.23.46 0.864
4k8s 1QTBeta-secretase 1 3.4.23.46 0.860
2viy VG3Beta-secretase 1 3.4.23.46 0.859
4lxm 1YUBeta-secretase 1 3.4.23.46 0.857
3ohh 3HHBeta-secretase 1 3.4.23.46 0.856
4lxa 1YSBeta-secretase 1 3.4.23.46 0.850
2wf3 ZY3Beta-secretase 1 3.4.23.46 0.848
4ke1 1R6Beta-secretase 1 3.4.23.46 0.847
2vj9 VG7Beta-secretase 1 3.4.23.46 0.846
3lpj Z75Beta-secretase 1 3.4.23.46 0.843
4i0j 842Beta-secretase 1 3.4.23.46 0.842
4lxk 1YTBeta-secretase 1 3.4.23.46 0.841
3dv5 BAVBeta-secretase 1 3.4.23.46 0.836
3r2f PB0Beta-secretase 1 3.4.23.46 0.830
2b8l 5HABeta-secretase 1 3.4.23.46 0.829
2wez ZYEBeta-secretase 1 3.4.23.46 0.825
2wf4 ZY4Beta-secretase 1 3.4.23.46 0.822
2hiz LIJBeta-secretase 1 3.4.23.46 0.820
2p8h MY9Beta-secretase 1 3.4.23.46 0.815
4fco 0U4Beta-secretase 1 3.4.23.46 0.810
3n4l 842Beta-secretase 1 3.4.23.46 0.807
3vf3 0GSBeta-secretase 1 3.4.23.46 0.806
4dpi 0N1Beta-secretase 1 3.4.23.46 0.803
3lpi Z74Beta-secretase 1 3.4.23.46 0.801
2fdp FRPBeta-secretase 1 3.4.23.46 0.776
3dm6 757Beta-secretase 1 3.4.23.46 0.773
3pi5 3P5Beta-secretase 1 3.4.23.46 0.772
4k9h 1QUBeta-secretase 1 3.4.23.46 0.758
3pww ROCEndothiapepsin 3.4.23.22 0.749
4d89 BXDBeta-secretase 1 3.4.23.46 0.749
3vg1 0GTBeta-secretase 1 3.4.23.46 0.746
2vkm BSDBeta-secretase 1 3.4.23.46 0.730
3qbh QBHBeta-secretase 1 3.4.23.46 0.727
2qzl IXSBeta-secretase 1 3.4.23.46 0.720
1gvv 0GMEndothiapepsin 3.4.23.22 0.707
1e80 0GQEndothiapepsin 3.4.23.22 0.701
2f3e AXQBeta-secretase 1 3.4.23.46 0.701
2p4j 23IBeta-secretase 1 3.4.23.46 0.697
3k5d XLIBeta-secretase 1 3.4.23.46 0.694
2f3f AXFBeta-secretase 1 3.4.23.46 0.685
3ixk 929Beta-secretase 1 3.4.23.46 0.681
3lpk Z76Beta-secretase 1 3.4.23.46 0.678
2jji 0QSEndothiapepsin 3.4.23.22 0.669
4gid 0GHBeta-secretase 1 3.4.23.46 0.669
3own 3OXRenin 3.4.23.15 0.668
4e5f 0N7Polymerase acidic protein / 0.663
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
3skg PB8Beta-secretase 1 3.4.23.46 0.660
4e5i 0N9Polymerase acidic protein / 0.660
3i25 MV7Beta-secretase 1 3.4.23.46 0.656