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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ho6 UPG Glucose-1-phosphate thymidylyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ho6 UPGGlucose-1-phosphate thymidylyltransferase / 1.224
1iin UPGGlucose-1-phosphate thymidylyltransferase 2.7.7.24 1.105
4ho9 GDUGlucose-1-phosphate thymidylyltransferase / 0.999
4ho5 DAUGlucose-1-phosphate thymidylyltransferase / 0.953
4ho8 UPGGlucose-1-phosphate thymidylyltransferase / 0.900
1mp4 UPGGlucose-1-phosphate thymidylyltransferase / 0.840
1g1l DAUGlucose-1-phosphate thymidylyltransferase / 0.793
1h5t DAUGlucose-1-phosphate thymidylyltransferase 1 / 0.784
3d8v UD1Bifunctional protein GlmU / 0.720
4ho2 THMGlucose-1-phosphate thymidylyltransferase / 0.718
5ify TRHGlucose-1-phosphate thymidylyltransferase / 0.701
1fwy UD1Bifunctional protein GlmU / 0.681
1mp5 UPGGlucose-1-phosphate thymidylyltransferase 2.7.7.24 0.670
1g3l TRHGlucose-1-phosphate thymidylyltransferase / 0.659
2v0i UD1Bifunctional protein GlmU / 0.658