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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4hnf 16W Casein kinase I isoform delta 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4hnf 16WCasein kinase I isoform delta 2.7.11.1 1.135
4e5i 0N9Polymerase acidic protein / 0.744
4d9t 0JGRibosomal protein S6 kinase alpha-3 2.7.11.1 0.673
2cgw 3C3Serine/threonine-protein kinase Chk1 2.7.11.1 0.667
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.666
4fv9 E71Mitogen-activated protein kinase 1 2.7.11.24 0.665
1eyq NARChalcone--flavonone isomerase 1 5.5.1.6 0.663
3cqw CQWRAC-alpha serine/threonine-protein kinase 2.7.11.1 0.662
4e5f 0N7Polymerase acidic protein / 0.660
4bid IE8Mitogen-activated protein kinase kinase kinase 5 2.7.11.25 0.652
4i6g FADCryptochrome-2 / 0.650