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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4h6r FDA Proline dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4h6r FDAProline dehydrogenase / 1.347
4nmd FDABifunctional protein PutA / 1.012
2g37 FADProline dehydrogenase / 0.981
2fzm FADBifunctional protein PutA 1.5.5.2 0.922
4nm9 FADBifunctional protein PutA / 0.897
4nmb FADBifunctional protein PutA / 0.890
2fzn FADBifunctional protein PutA 1.5.5.2 0.883
4q73 FADBifunctional protein PutA / 0.869
4nmc FADBifunctional protein PutA / 0.858
3haz FADBifunctional protein PutA / 0.848
4q72 FADBifunctional protein PutA / 0.847
4q71 FADBifunctional protein PutA / 0.842
1tj2 FADBifunctional protein PutA 1.5.5.2 0.836
1tj0 FADBifunctional protein PutA 1.5.5.2 0.802
4o8a FADBifunctional protein PutA 1.2.1.88 0.786
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.708
4hia FMNLOV protein / 0.705
2bra FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.693
4utk FNRXenobiotic reductase / 0.685
4m5p FMNNADPH dehydrogenase / 0.681
4rje FNRLactate oxidase / 0.676
5buk FADFADH2-dependent halogenase / 0.674
4df2 FMNNADPH dehydrogenase / 0.671
4yl2 FMNLactate oxidase / 0.670
5ahk FADAcetolactate synthase II, large subunit / 0.670
5ahs FADAcyl-CoA dehydrogenase / 0.670
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.667
3gwd FADCyclohexanone monooxygenase / 0.667
2pg0 FADAcyl-CoA dehydrogenase / 0.666
5er0 FADUncharacterized NAD(FAD)-dependent dehydrogenase / 0.664
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.663
3ept FDAPutative FAD-monooxygenase / 0.663
3ad9 FADSubunit beta of sarcosine oxidase / 0.662
4fk8 FADFerredoxin--NADP reductase / 0.662
2gjn FMNNitronate monooxygenase 1.13.12.16 0.661
4h4s FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.659
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.659
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.658
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.658
5af7 FADAcyl-CoA dehydrogenase / 0.658
3fsu FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.657
4h4y FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.657
1ofe FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.656
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.654
2bpo FADNADPH--cytochrome P450 reductase / 0.651
5jsc FADPutative acyl-CoA dehydrogenase / 0.651
1flm FMNFMN-binding protein / 0.650
2z6i FMN2-nitropropane dioxygenase / 0.650
4i6g FADCryptochrome-2 / 0.650