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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4h2i A12 5'-nucleotidase 3.1.3.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4h2i A125'-nucleotidase 3.1.3.5 1.104
1hpu A12Protein UshA 3.1.3.5 0.678
2d3a ADPGlutamine synthetase root isozyme 3 6.3.1.2 0.670
4h5e YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.670
4lfv YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.669
4h5d YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.667
4dem YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.666
3cgd COACoenzyme A disulfide reductase / 0.663
3cge COACoenzyme A disulfide reductase / 0.662
4mfe BTNPyruvate carboxylase / 0.659
1xjw PALAspartate carbamoyltransferase catalytic subunit 2.1.3.2 0.658
2z4w 749Geranylgeranyl pyrophosphate synthase / 0.650