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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4h2d FMN NADPH-dependent diflavin oxidoreductase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 1.027
2bf4 FMNNADPH--cytochrome P450 reductase / 0.890
4yao FMNNADPH--cytochrome P450 reductase / 0.850
1ofv FMNFlavodoxin / 0.817
1ahn FMNFlavodoxin 1 / 0.809
1amo FMNNADPH--cytochrome P450 reductase / 0.802
1ja1 FMNNADPH--cytochrome P450 reductase / 0.792
3qfr FMNNADPH--cytochrome P450 reductase / 0.786
3ojx FMNNADPH--cytochrome P450 reductase / 0.784
1ja0 FMNNADPH--cytochrome P450 reductase / 0.774
4oxx FMNCindoxin / 0.774
2bn4 FMNNADPH--cytochrome P450 reductase / 0.769
2fx2 FMNFlavodoxin / 0.766
1czn FMNFlavodoxin / 0.763
1j8q FMNFlavodoxin / 0.763
3ojw FMNNADPH--cytochrome P450 reductase / 0.758
2v5u FMNFlavodoxin / 0.756
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.754
3qe2 FMNNADPH--cytochrome P450 reductase / 0.754
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.753
1wsb FMNFlavodoxin / 0.746
1xyv FMNFlavodoxin / 0.744
1yob FMNFlavodoxin 2 / 0.741
3esz FMNFlavodoxin / 0.741
1azl FMNFlavodoxin / 0.737
2w5u FMNFlavodoxin / 0.732
2fcr FMNFlavodoxin / 0.731
1akw FMNFlavodoxin / 0.726
1akr FMNFlavodoxin / 0.725
1ykg FMNSulfite reductase [NADPH] flavoprotein alpha-component / 0.719
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.713
1fx1 FMNFlavodoxin / 0.712
5xr8 FMNCannabinoid receptor 1 / 0.711
5tgz FMNCannabinoid receptor 1 / 0.707
1j9g FMNFlavodoxin / 0.700
1c7f FMNFlavodoxin / 0.697
4fx2 FMNFlavodoxin / 0.694
4y7c FMNNADPH--cytochrome P450 reductase / 0.692
4bmo FMNProtein NrdI / 0.691
3f6s FMNFlavodoxin / 0.690
1fue FMNFlavodoxin / 0.688
3esy FMNFlavodoxin / 0.688
1xyy FMNFlavodoxin / 0.685
5xra FMNCannabinoid receptor 1 / 0.685
2v5v FMNFlavodoxin / 0.680
3f90 FMNFlavodoxin / 0.679
3n39 FMNProtein NrdI / 0.676
2mok FMNFlavodoxin 1 / 0.673
4bmp FMNProtein NrdI / 0.673
1j9z FMNNADPH--cytochrome P450 reductase / 0.669
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.662
1aku FMNFlavodoxin / 0.659
2mt9 FMNFlavodoxin 2 / 0.657
1bu5 RBFFlavodoxin / 0.652