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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4h0d ZZ7 Metallo-beta-lactamase type 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4h0d ZZ7Metallo-beta-lactamase type 2 / 1.011
4raw ZZ7Metallo-beta-lactamase type 2 / 0.853
4hl2 ZZ7Metallo-beta-lactamase type 2 / 0.839
4ey2 0RMMetallo-beta-lactamase type 2 / 0.814
4eyb 0WOMetallo-beta-lactamase type 2 / 0.794
4ram PNMMetallo-beta-lactamase type 2 / 0.761
4eyf PNKMetallo-beta-lactamase type 2 / 0.750
4hl1 ZZ7Metallo-beta-lactamase type 2 / 0.715
1jjt BDSBeta-lactamase / 0.664
1jje BYSBeta-lactamase / 0.655
3r0i C0K1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.650