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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gvq N4M Methenyltetrahydromethanopterin cyclohydrolase 3.5.4.27

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4gvq N4MMethenyltetrahydromethanopterin cyclohydrolase 3.5.4.27 1.297
4gvs F4MMethenyltetrahydromethanopterin cyclohydrolase 3.5.4.27 0.767
1y60 H4M5,6,7,8-tetrahydromethanopterin hydro-lyase 4.2.1.147 0.670
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.667
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.667
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.667
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.666
1mmk H4BPhenylalanine-4-hydroxylase 1.14.16.1 0.663
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.663
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.662
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.660
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.656
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.652
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.651
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.651
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.651