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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4guy KLJ Macrophage metalloelastase 3.4.24.65

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4guy KLJMacrophage metalloelastase 3.4.24.65 0.965
2woa 576Macrophage metalloelastase 3.4.24.65 0.768
3zxh E41Collagenase 3 3.4.24 0.712
4ja1 NGHStromelysin-1 3.4.24.17 0.708
2wo8 077Macrophage metalloelastase 3.4.24.65 0.707
1g05 BBHStromelysin-1 3.4.24.17 0.693
4h49 L29Macrophage metalloelastase 3.4.24.65 0.691
3tsk QEGMacrophage metalloelastase 3.4.24.65 0.689
4h76 10BMacrophage metalloelastase 3.4.24.65 0.689
3kry 3KRCollagenase 3 3.4.24 0.687
3o2x 3O2Collagenase 3 3.4.24 0.685
2i47 KGYDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.684
2hu6 37AMacrophage metalloelastase 3.4.24.65 0.683
3oho Z79Stromelysin-1 3.4.24.17 0.682
1zxc IH6Disintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.680
1d8m BBHStromelysin-1 3.4.24.17 0.672
3lik EEGMacrophage metalloelastase 3.4.24.65 0.672
1bqo N25Stromelysin-1 3.4.24.17 0.668
2d1o FA4Stromelysin-1 3.4.24.17 0.666
4i03 L88Macrophage metalloelastase 3.4.24.65 0.656
1g49 111Stromelysin-1 3.4.24.17 0.653
2jnp NGHStromelysin-1 3.4.24.17 0.650
2ow1 7MRMatrix metalloproteinase-9 3.4.24.35 0.650