sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4guk | P2G | Neuronal calcium sensor 1 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1n35 | CH1 | RNA-directed RNA polymerase lambda-3 | 2.7.7.48 | 0.744 | |
| 1n38 | U3H | RNA-directed RNA polymerase lambda-3 | 2.7.7.48 | 0.744 | |
| 1nmd | ATP | Major actin | / | 0.744 | |
| 1wet | GUN | HTH-type transcriptional repressor PurR | / | 0.744 | |
| 2cgw | 3C3 | Serine/threonine-protein kinase Chk1 | 2.7.11.1 | 0.744 | |
| 2d09 | FLV | Biflaviolin synthase CYP158A2 | / | 0.744 | |
| 2fzk | CTP | Aspartate carbamoyltransferase regulatory chain | / | 0.744 | |
| 2jey | HLO | Acetylcholinesterase | 3.1.1.7 | 0.744 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.744 | |
| 2z7q | ACP | Ribosomal protein S6 kinase alpha-1 | 2.7.11.1 | 0.744 | |
| 3cwq | ADP | ParA family chromosome partitioning protein | / | 0.744 | |
| 3f8r | NAP | NADH oxidase/thioredoxin reductase | / | 0.744 | |
| 3fzf | ATP | Heat shock cognate 71 kDa protein | / | 0.744 | |
| 3u9d | ATP | Actin, alpha skeletal muscle | / | 0.744 | |
| 3ypi | PGH | Triosephosphate isomerase | 5.3.1.1 | 0.744 | |
| 3zzn | ADP | L-lactate dehydrogenase | / | 0.744 | |
| 4e5l | DBH | Polymerase acidic protein | / | 0.744 | |
| 4guk | P2G | Neuronal calcium sensor 1 | / | 0.726 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.681 | |
| 5htx | ADP | Putative xylulose kinase | / | 0.680 | |
| 2q2y | ADP | Kinesin-like protein KIF11 | / | 0.679 | |
| 1nsy | ATP | NH(3)-dependent NAD(+) synthetase | 6.3.1.5 | 0.675 | |
| 1gld | ADP | Glycerol kinase | / | 0.671 | |
| 3hz6 | ADP | Xylulokinase | / | 0.667 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.667 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.660 | |
| 1h48 | C5P | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 4.6.1.12 | 0.660 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.660 | |
| 2hru | ADP | Phosphoribosylformylglycinamidine synthase subunit PurL | / | 0.660 | |
| 2hs4 | ACP | Phosphoribosylformylglycinamidine synthase subunit PurL | / | 0.660 | |
| 2puf | GUN | HTH-type transcriptional repressor PurR | / | 0.660 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.660 | |
| 3kjg | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.660 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.660 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.660 | |
| 4cdg | ADP | Bloom syndrome protein | 3.6.4.12 | 0.660 | |
| 4nxv | GDP | Mitochondrial dynamics protein MID51 | / | 0.660 | |
| 4nxx | GDP | Mitochondrial dynamics protein MID51 | / | 0.660 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.658 | |
| 2opn | SUF | Farnesyl pyrophosphate synthase | 2.5.1.10 | 0.657 | |
| 4fhp | UTP | Terminal uridylyltransferase cid1 | / | 0.652 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.651 | |
| 1zw5 | ZOL | Farnesyl pyrophosphate synthase | 2.5.1.10 | 0.650 | |
| 3ldw | ZOL | Farnesyl pyrophosphate synthase, putative | / | 0.650 |