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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4grb 0XG Casein kinase II subunit alpha 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4grb 0XGCasein kinase II subunit alpha 2.7.11.1 0.993
3pe2 E1BCasein kinase II subunit alpha 2.7.11.1 0.698
3r0t FU9Casein kinase II subunit alpha 2.7.11.1 0.697
4bbe 3O4Tyrosine-protein kinase JAK2 / 0.694
2euf LQQCyclin-dependent kinase 6 2.7.11.22 0.670
3be9 P04Casein kinase II subunit alpha 2.7.11.1 0.669
3nga 3NGCasein kinase II subunit alpha 2.7.11.1 0.665
2hzi JINTyrosine-protein kinase ABL1 2.7.10.2 0.663
4bbf O19Tyrosine-protein kinase JAK2 / 0.663
3at3 ATKCasein kinase II subunit alpha 2.7.11.1 0.661
4dea NHIAurora kinase A 2.7.11.1 0.661
2x4f 16XMyosin light chain kinase family member 4 2.7.11.1 0.659
4e93 GUITyrosine-protein kinase Fes/Fps 2.7.10.2 0.657
3pe1 3NGCasein kinase II subunit alpha 2.7.11.1 0.656
4aot GW8Serine/threonine-protein kinase 10 2.7.11.1 0.653
4fkt 48KCyclin-dependent kinase 2 2.7.11.22 0.650