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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gr3 R45 Macrophage metalloelastase 3.4.24.65

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4gr3 R45Macrophage metalloelastase 3.4.24.65 1.103
4gr0 R4BMacrophage metalloelastase 3.4.24.65 1.044
4gr8 R4CMacrophage metalloelastase 3.4.24.65 0.949
4gql R47Macrophage metalloelastase 3.4.24.65 0.854
2ovz 5MRMatrix metalloproteinase-9 3.4.24.35 0.785
3ljg EEFMacrophage metalloelastase 3.4.24.65 0.776
1hv5 RXPStromelysin-3 3.4.24 0.769
3lil EEAMacrophage metalloelastase 3.4.24.65 0.722
2wo8 023Macrophage metalloelastase 3.4.24.65 0.679
1c8t TR1Stromelysin-1 3.4.24.17 0.677
3lik EEGMacrophage metalloelastase 3.4.24.65 0.672
3tsk QEGMacrophage metalloelastase 3.4.24.65 0.668
1gkc NFHMatrix metalloproteinase-9 3.4.24.35 0.667
1mnc PLHNeutrophil collagenase 3.4.24.34 0.664
1jk3 BATMacrophage metalloelastase 3.4.24.65 0.661
4i03 L88Macrophage metalloelastase 3.4.24.65 0.660
2oy2 ILE_ALA_GLYNeutrophil collagenase 3.4.24.34 0.650