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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gqe 6KJ Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4gqe 6KJNitric oxide synthase, brain 1.14.13.39 0.945
4fvz 4KJNitric oxide synthase, brain 1.14.13.39 0.809
4fw0 5KJNitric oxide synthase, brain 1.14.13.39 0.746
3tym 08RNitric oxide synthase, brain 1.14.13.39 0.678
3nln JRSNitric oxide synthase, brain 1.14.13.39 0.676
3jx2 JI4Nitric oxide synthase, brain 1.14.13.39 0.673
3nlp JSSNitric oxide synthase, brain 1.14.13.39 0.673
3ufq HW5Nitric oxide synthase, brain 1.14.13.39 0.673
3nlw 3XFNitric oxide synthase, brain 1.14.13.39 0.672
3nlk JSSNitric oxide synthase, brain 1.14.13.39 0.669
3jx0 JI4Nitric oxide synthase, brain 1.14.13.39 0.667
3nlv 3XANitric oxide synthase, brain 1.14.13.39 0.667
1p6j DP9Nitric oxide synthase, brain 1.14.13.39 0.664
3b3p JI7Nitric oxide synthase, brain 1.14.13.39 0.655