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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gpb GFP Glycogen phosphorylase, muscle form 2.4.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4gpb GFPGlycogen phosphorylase, muscle form 2.4.1.1 0.981
3ms4 21NGlycogen phosphorylase, muscle form 2.4.1.1 0.820
3mt8 17TGlycogen phosphorylase, muscle form 2.4.1.1 0.811
3zcs CAWGlycogen phosphorylase, muscle form 2.4.1.1 0.805
2qrq S13Glycogen phosphorylase, muscle form 2.4.1.1 0.795
2g9u G27Glycogen phosphorylase, muscle form 2.4.1.1 0.793
2qn3 F55Glycogen phosphorylase, muscle form 2.4.1.1 0.793
5gpb GPMGlycogen phosphorylase, muscle form 2.4.1.1 0.790
2qln F59Glycogen phosphorylase, muscle form 2.4.1.1 0.787
1k08 BZDGlycogen phosphorylase, muscle form 2.4.1.1 0.786
3g2h KOTGlycogen phosphorylase, muscle form 2.4.1.1 0.783
4el5 D1MGlycogen phosphorylase, muscle form 2.4.1.1 0.779
2qn7 HBZGlycogen phosphorylase, muscle form 2.4.1.1 0.770
3g2l LEWGlycogen phosphorylase, muscle form 2.4.1.1 0.770
2g9v IFMGlycogen phosphorylase, muscle form 2.4.1.1 0.769
4el0 D1KGlycogen phosphorylase, muscle form 2.4.1.1 0.740
4eke D1IGlycogen phosphorylase, muscle form 2.4.1.1 0.732
4xsr UPGAlr3699 protein / 0.725
3l7d DK5Glycogen phosphorylase, muscle form 2.4.1.1 0.717
3t3i GPWGlycogen phosphorylase, muscle form 2.4.1.1 0.693