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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ggz BTN Bll1558 protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ggz BTNBll1558 protein / 1.063
3rdo BTNStreptavidin / 0.768
4bcs BTNAvidin-related protein 4/5 / 0.759
4z28 BTNHoefavidin / 0.758
2zsc BTNTamavidin2 / 0.757
1y52 BTNAvidin-related protein 4/5 / 0.754
2c4i BTNAvidin / 0.753
2rtf BTNStreptavidin / 0.751
2uyw BTNAvd protein / 0.749
1swe BTNStreptavidin / 0.748
4bj8 BTNAvidin / 0.741
2rte BTNStreptavidin / 0.739
3t2w BTNAvidin/streptavidin / 0.738
3vhi VHIAvidin / 0.738
2fhl BNIAvidin-related protein 4/5 / 0.736
2izi BTNStreptavidin / 0.736
3wyp BSOStreptavidin / 0.735
2rtg BTNStreptavidin / 0.734
1ndj BTNStreptavidin / 0.728
1swn BTNStreptavidin / 0.728
4yvb BTNStreptavidin / 0.725
1n43 BTNStreptavidin / 0.722
1n9m BTNStreptavidin / 0.721
1swt BTNStreptavidin / 0.720
1swg BTNStreptavidin / 0.719
4gd9 BTNStreptavidin / 0.718
2fhn BNIAvidin-related protein 4/5 / 0.715
1lcz BH7Streptavidin / 0.711
1nc9 IMIStreptavidin / 0.705
2izg BTNStreptavidin / 0.702
2izh BTNStreptavidin / 0.701
2izj BTNStreptavidin / 0.701
2y3f BTNStreptavidin / 0.700
2rtd BTNStreptavidin / 0.699
3vgw NVZAvidin / 0.699
1swd BTNStreptavidin / 0.698
2avi BTNAvidin / 0.698
3ew2 BTNHypothetical conserved protein / 0.698
3rdq DTBStreptavidin / 0.693
1i9h BNIStreptavidin / 0.687
2izf BTNStreptavidin / 0.684
1avd BTNAvidin / 0.678
4dne DTBStreptavidin / 0.674
4gda BTNStreptavidin / 0.674
1lel BH7Avidin / 0.673
1df8 BTNStreptavidin / 0.669
2rtr IMIStreptavidin / 0.669
2uz2 BTNAvd protein / 0.669
4bx7 B4FStreptavidin / 0.666
3vhm NPKAvidin / 0.663
1swr BTNStreptavidin / 0.660
1luq BTNStreptavidin / 0.656
1lcw SHMStreptavidin / 0.654
2rtq IMIStreptavidin / 0.654
3wzn BTNStreptavidin / 0.651
2jgs BTNAvidin / 0.650