Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4geb 0LD Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4geb 0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 1.288
4ge7 0K5Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 1.185
4ge4 0KEKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 1.099
4gdy 0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 1.051
4ge9 0L0Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.970
4w5k PLPAspartate aminotransferase, mitochondrial / 0.875
4wlj IK2Kynurenine--oxoglutarate transaminase 1 2.6.1.7 0.848
1u08 PLPMethionine aminotransferase / 0.832
1arg PPDAspartate aminotransferase 2.6.1.1 0.766
3ei8 PL5LL-diaminopimelate aminotransferase, chloroplastic / 0.724
1akb PPDAspartate aminotransferase, mitochondrial 2.6.1.1 0.718
1maq PGUAspartate aminotransferase, mitochondrial 2.6.1.1 0.718
1aka PLPAspartate aminotransferase, mitochondrial 2.6.1.1 0.703
4je5 PLPAromatic/aminoadipate aminotransferase 1 2.6.1.39 0.696
1x28 PGUAspartate aminotransferase 2.6.1.1 0.687
4d9e LCSD-cysteine desulfhydrase / 0.682
3ele PLPAminotransferase / 0.675
1arh PPDAspartate aminotransferase 2.6.1.1 0.674
4dbc 3QPAspartate aminotransferase 2.6.1.1 0.672
3qpg 3QPAspartate aminotransferase 2.6.1.1 0.671
3zrr PXGSerine-pyruvate aminotransferase (AgxT) / 0.671
4emy PLPAminotransferase class I and II / 0.671
1j0d 5PA1-aminocyclopropane-1-carboxylate deaminase 3.5.99.7 0.664
4d96 5PAD-cysteine desulfhydrase / 0.664
1akc PPEAspartate aminotransferase, mitochondrial 2.6.1.1 0.663
4d9f DCSD-cysteine desulfhydrase / 0.663
3tqx PLP2-amino-3-ketobutyrate coenzyme A ligase / 0.661
2q0l NAPThioredoxin reductase 1.8.1.9 0.660
1c7o PPGHemolysin / 0.659
1cq8 PY6Aspartate aminotransferase 2.6.1.1 0.659
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.659
4gcm NAPThioredoxin reductase 1.8.1.9 0.658
2hk9 NAPShikimate dehydrogenase (NADP(+)) / 0.657
4jf1 PLPAcetylornithine/succinyldiaminopimelate aminotransferase 2.6.1.11 0.654
1ahg TYR_PLPAspartate aminotransferase 2.6.1.1 0.653
3zcb ATPAdenosine monophosphate-protein transferase VbhT 2.7.7.n1 0.653
4fl0 PLPAminotransferase ALD1, chloroplastic 2.6.1 0.651