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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ge4 0KE Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ge4 0KEKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 1.383
4ge7 0K5Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 1.219
4geb 0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 1.099
4ge9 0L0Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 1.026
4gdy 0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 1.025
4wlj IK2Kynurenine--oxoglutarate transaminase 1 2.6.1.7 0.880
4w5k PLPAspartate aminotransferase, mitochondrial / 0.874
1maq PGUAspartate aminotransferase, mitochondrial 2.6.1.1 0.815
1x28 PGUAspartate aminotransferase 2.6.1.1 0.790
1u08 PLPMethionine aminotransferase / 0.778
1arg PPDAspartate aminotransferase 2.6.1.1 0.769
1cq8 PY6Aspartate aminotransferase 2.6.1.1 0.762
1map KETAspartate aminotransferase, mitochondrial 2.6.1.1 0.755
3qpg 3QPAspartate aminotransferase 2.6.1.1 0.751
1cq7 PY5Aspartate aminotransferase 2.6.1.1 0.748
1ahg TYR_PLPAspartate aminotransferase 2.6.1.1 0.732
4emy PLPAminotransferase class I and II / 0.709
4d96 5PAD-cysteine desulfhydrase / 0.679
1arh PPDAspartate aminotransferase 2.6.1.1 0.674
1toj HCIAspartate aminotransferase 2.6.1.1 0.674
4dbc 3QPAspartate aminotransferase 2.6.1.1 0.671
3zrr PXGSerine-pyruvate aminotransferase (AgxT) / 0.666
1akb PPDAspartate aminotransferase, mitochondrial 2.6.1.1 0.664
5ayz NCNNicotinate-nucleotide pyrophosphorylase [carboxylating] 2.4.2.19 0.664
4rkd KETAminotransferase / 0.662
3aej AA5Methionine gamma-lyase / 0.660
3tqx PLP2-amino-3-ketobutyrate coenzyme A ligase / 0.659
4je5 PLPAromatic/aminoadipate aminotransferase 1 2.6.1.39 0.652
1akc PPEAspartate aminotransferase, mitochondrial 2.6.1.1 0.651
1dfo PLGSerine hydroxymethyltransferase 2.1.2.1 0.651
3vax PLPUncharacterized protein / 0.651
4y1b NAPAntE / 0.651