sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4gde | FDA | UDP-galactopyranose mutase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4gde | FDA | UDP-galactopyranose mutase | / | 1.443 | |
| 4u8m | FDA | UDP-galactopyranose mutase | / | 1.437 | |
| 4u8k | FDA | UDP-galactopyranose mutase | / | 1.384 | |
| 4u8n | FDA | UDP-galactopyranose mutase | / | 1.369 | |
| 4u8o | FDA | UDP-galactopyranose mutase | / | 1.367 | |
| 3utg | FDA | UDP-galactopyranose mutase | / | 1.350 | |
| 3utf | FDA | UDP-galactopyranose mutase | / | 1.347 | |
| 4u8p | FDA | UDP-galactopyranose mutase | / | 1.335 | |
| 3uth | FDA | UDP-galactopyranose mutase | / | 1.319 | |
| 4u8i | FDA | UDP-galactopyranose mutase | / | 1.319 | |
| 4u8l | FDA | UDP-galactopyranose mutase | / | 1.312 | |
| 4wx1 | FDA | UDP-galactopyranose mutase | / | 1.312 | |
| 4u8j | FDA | UDP-galactopyranose mutase | / | 1.272 | |
| 4dsh | FDA | Uncharacterized protein | / | 1.210 | |
| 3ukl | FAD | UDP-galactopyranose mutase | / | 1.158 | |
| 3ukf | FDA | UDP-galactopyranose mutase | / | 1.085 | |
| 4dsg | FAD | Uncharacterized protein | / | 1.053 | |
| 3ukk | FAD | UDP-galactopyranose mutase | / | 1.027 | |
| 3ukk | FDA | UDP-galactopyranose mutase | / | 0.970 | |
| 5hhf | FDA | UDP-galactopyranose mutase | / | 0.931 | |
| 3uka | FAD | UDP-galactopyranose mutase | / | 0.930 | |
| 2q7v | FAD | Thioredoxin reductase | / | 0.869 | |
| 2jb2 | FAD | L-amino acid oxidase | / | 0.865 | |
| 1rsg | FAD | Polyamine oxidase FMS1 | / | 0.833 | |
| 3bi2 | FAD | Polyamine oxidase FMS1 | / | 0.825 | |
| 3ute | FAD | UDP-galactopyranose mutase | / | 0.824 | |
| 4gdp | FAD | Polyamine oxidase FMS1 | / | 0.824 | |
| 2bi8 | FAD | UDP-galactopyranose mutase | 5.4.99.9 | 0.821 | |
| 4gdc | FAD | UDP-galactopyranose mutase | / | 0.820 | |
| 1f8s | FAD | L-amino-acid oxidase | 1.4.3.2 | 0.819 | |
| 2c3c | FAD | 2-oxopropyl-CoM reductase, carboxylating | 1.8.1.5 | 0.816 | |
| 2bi7 | FAD | UDP-galactopyranose mutase | 5.4.99.9 | 0.815 | |
| 1v0j | FAD | UDP-galactopyranose mutase | 5.4.99.9 | 0.799 | |
| 3kpf | FAD | Polyamine oxidase | 1.5.3.14 | 0.799 | |
| 3lov | FAD | Protoporphyrinogen oxidase | / | 0.799 | |
| 2iid | FAD | L-amino-acid oxidase | 1.4.3.2 | 0.797 | |
| 3int | FDA | UDP-galactopyranose mutase | 5.4.99.9 | 0.797 | |
| 4fwf | FAD | Lysine-specific histone demethylase 1B | 1 | 0.795 | |
| 4guu | FA9 | Lysine-specific histone demethylase 1B | 1 | 0.794 | |
| 3kve | FAD | L-amino-acid oxidase | / | 0.791 | |
| 1e1l | FAD | NADPH:adrenodoxin oxidoreductase, mitochondrial | 1.18.1.6 | 0.790 | |
| 2b9x | FAD | Putative aminooxidase | / | 0.790 | |
| 1e6e | FAD | NADPH:adrenodoxin oxidoreductase, mitochondrial | 1.18.1.6 | 0.789 | |
| 3cnd | FAD | Polyamine oxidase FMS1 | / | 0.789 | |
| 3kyb | FAD | UDP-galactopyranose mutase | 5.4.99.9 | 0.787 | |
| 4gdd | FAD | UDP-galactopyranose mutase | / | 0.786 | |
| 2jae | FAD | L-amino acid oxidase | / | 0.785 | |
| 1yy5 | FAD | Polyamine oxidase FMS1 | / | 0.784 | |
| 2jb1 | FAD | L-amino acid oxidase | / | 0.783 | |
| 2iw5 | FAD | Lysine-specific histone demethylase 1A | 1 | 0.781 | |
| 5l3d | FAD | Lysine-specific histone demethylase 1A | 1 | 0.781 | |
| 2yr4 | FAD | Phenylalanine 2-monooxygenase precursor | 1.13.12.9 | 0.779 | |
| 1f8r | FAD | L-amino-acid oxidase | 1.4.3.2 | 0.776 | |
| 3m12 | FAD | Monomeric sarcosine oxidase | 1.5.3.1 | 0.776 | |
| 1e1k | FAD | NADPH:adrenodoxin oxidoreductase, mitochondrial | 1.18.1.6 | 0.775 | |
| 3ka7 | FAD | Putative oxidoreductase | / | 0.774 | |
| 4mo2 | FAD | UDP-galactopyranose mutase | / | 0.774 | |
| 3he3 | FAD | UDP-galactopyranose mutase | / | 0.773 | |
| 1i8t | FAD | UDP-galactopyranose mutase | 5.4.99.9 | 0.770 | |
| 3f8d | FAD | NADH oxidase/thioredoxin reductase | / | 0.769 | |
| 1z6l | FAD | Polyamine oxidase FMS1 | / | 0.768 | |
| 5br7 | FAD | UDP-galactopyranose mutase | / | 0.768 | |
| 1h81 | FAD | Polyamine oxidase | 1.5.3.14 | 0.765 | |
| 1xpq | FAD | Polyamine oxidase FMS1 | / | 0.764 | |
| 3mj4 | FAD | UDP-galactopyranose mutase | / | 0.764 | |
| 4mo2 | FDA | UDP-galactopyranose mutase | / | 0.763 | |
| 3ict | FAD | Coenzyme A disulfide reductase | / | 0.760 | |
| 4ysh | FAD | Glycine oxidase | / | 0.760 | |
| 1tdn | FAD | L-amino-acid oxidase | 1.4.3.2 | 0.759 | |
| 2bac | FAD | Putative aminooxidase | / | 0.759 | |
| 4hsu | FAD | Lysine-specific histone demethylase 1B | 1 | 0.759 | |
| 2ba9 | FAD | Putative aminooxidase | / | 0.756 | |
| 1tdo | FAD | L-amino-acid oxidase | 1.4.3.2 | 0.754 | |
| 4gcm | FAD | Thioredoxin reductase | 1.8.1.9 | 0.753 | |
| 1reo | FAD | L-amino-acid oxidase | 1.4.3.2 | 0.752 | |
| 2dw4 | FAD | Lysine-specific histone demethylase 1A | 1 | 0.752 | |
| 3cnt | FAD | Polyamine oxidase FMS1 | / | 0.751 | |
| 2fje | FAD | Adenylylsulfate reductase, subunit A (AprA) | / | 0.750 | |
| 1lqu | FAD | NADPH-ferredoxin reductase FprA | 1.18.1.2 | 0.749 | |
| 1gte | FAD | Dihydropyrimidine dehydrogenase [NADP(+)] | 1.3.1.2 | 0.748 | |
| 2b9w | FAD | Putative aminooxidase | / | 0.748 | |
| 3rnm | FAD | Dihydrolipoyl dehydrogenase, mitochondrial | 1.8.1.4 | 0.748 | |
| 2c7g | FAD | NADPH-ferredoxin reductase FprA | 1.18.1.2 | 0.747 | |
| 2yg6 | FAD | Putrescine oxidase | / | 0.746 | |
| 3we0 | FAD | Lysine 2-monooxygenase | / | 0.746 | |
| 4i58 | FAD | Cyclohexylamine Oxidase | / | 0.746 | |
| 4rsl | FAD | Fructosyl peptide oxidase | / | 0.744 | |
| 3hdy | FDA | UDP-galactopyranose mutase | / | 0.743 | |
| 3r9u | FAD | Thioredoxin reductase | / | 0.743 | |
| 1v59 | FAD | Dihydrolipoyl dehydrogenase, mitochondrial | 1.8.1.4 | 0.741 | |
| 2apg | FAD | Flavin-dependent tryptophan halogenase PrnA | 1.14.19.9 | 0.741 | |
| 2vvl | FAD | Monoamine oxidase N | 1.4.3.4 | 0.741 | |
| 2yg5 | FAD | Putrescine oxidase | / | 0.741 | |
| 3m0o | FAD | Monomeric sarcosine oxidase | 1.5.3.1 | 0.741 | |
| 2yr5 | FAD | Phenylalanine 2-monooxygenase precursor | 1.13.12.9 | 0.740 | |
| 3rha | FDA | Putrescine oxidase | / | 0.740 | |
| 1tde | FAD | Thioredoxin reductase | 1.8.1.9 | 0.739 | |
| 2vou | FAD | 2,6-dihydroxypyridine 3-monooxygenase | 1.14.13.10 | 0.739 | |
| 4gut | FAD | Lysine-specific histone demethylase 1B | 1 | 0.739 | |
| 4fx9 | FAD | Coenzyme A disulfide reductase | 1.8.1.14 | 0.736 | |
| 1tdk | FAD | L-amino-acid oxidase | 1.4.3.2 | 0.734 | |
| 2uxx | FAJ | Lysine-specific histone demethylase 1A | 1 | 0.734 | |
| 1e1n | FAD | NADPH:adrenodoxin oxidoreductase, mitochondrial | 1.18.1.6 | 0.733 | |
| 4gus | FAD | Lysine-specific histone demethylase 1B | 1 | 0.733 | |
| 3cty | FAD | Probable thioredoxin reductase | / | 0.732 | |
| 4fwj | FAD | Lysine-specific histone demethylase 1B | 1 | 0.732 | |
| 1nhr | FAD | NADH peroxidase | 1.11.1.1 | 0.731 | |
| 3cgc | FAD | Coenzyme A disulfide reductase | / | 0.731 | |
| 1y56 | FAD | 382aa long hypothetical sarcosine oxidase | / | 0.729 | |
| 2xls | FAD | Putative flavin-containing monooxygenase | / | 0.729 | |
| 3k7t | FAD | 6-hydroxy-L-nicotine oxidase | / | 0.728 | |
| 1ger | FAD | Glutathione reductase | 1.8.1.7 | 0.727 | |
| 1fl2 | FAD | Alkyl hydroperoxide reductase subunit F | 1.8.1 | 0.726 | |
| 3cgb | FAD | Coenzyme A disulfide reductase | / | 0.726 | |
| 1gth | FAD | Dihydropyrimidine dehydrogenase [NADP(+)] | 1.3.1.2 | 0.725 | |
| 2c4c | FAD | [F-actin]-methionine sulfoxide oxidase MICAL1 | 1.14.13 | 0.724 | |
| 2fja | FAD | Adenylylsulfate reductase, subunit A (AprA) | / | 0.724 | |
| 1h7w | FAD | Dihydropyrimidine dehydrogenase [NADP(+)] | 1.3.1.2 | 0.723 | |
| 4gur | FAD | Lysine-specific histone demethylase 1B | 1 | 0.723 | |
| 4h4p | FAD | Biphenyl dioxygenase ferredoxin reductase subunit | / | 0.722 | |
| 1jnr | FAD | Adenylylsulfate reductase, subunit A (AprA) | / | 0.721 | |
| 3cn8 | FAD | Polyamine oxidase FMS1 | / | 0.721 | |
| 3zdn | FAD | Monoamine oxidase N | 1.4.3.4 | 0.721 | |
| 1trb | FAD | Thioredoxin reductase | 1.8.1.9 | 0.719 | |
| 2hko | FAD | Lysine-specific histone demethylase 1A | 1 | 0.719 | |
| 2yg4 | FAD | Putrescine oxidase | / | 0.719 | |
| 3ad9 | FAD | Subunit beta of sarcosine oxidase | / | 0.719 | |
| 3cgd | FAD | Coenzyme A disulfide reductase | / | 0.719 | |
| 3lzw | FAD | Ferredoxin--NADP reductase 2 | 1.18.1.2 | 0.719 | |
| 3vqr | FAD | Putative oxidoreductase | / | 0.719 | |
| 2b9y | FAD | Putative aminooxidase | / | 0.718 | |
| 3qj4 | FAD | Renalase | / | 0.718 | |
| 1cjc | FAD | NADPH:adrenodoxin oxidoreductase, mitochondrial | 1.18.1.6 | 0.717 | |
| 1ges | FAD | Glutathione reductase | 1.8.1.7 | 0.717 | |
| 3hdy | FAD | UDP-galactopyranose mutase | / | 0.717 | |
| 2e1m | FAD | L-glutamate oxidase | / | 0.716 | |
| 2yg3 | FAD | Putrescine oxidase | / | 0.716 | |
| 3gsi | FAD | Dimethylglycine oxidase | 1.5.3.10 | 0.716 | |
| 1e1m | FAD | NADPH:adrenodoxin oxidoreductase, mitochondrial | 1.18.1.6 | 0.715 | |
| 4k2x | FAD | Polyketide oxygenase/hydroxylase | / | 0.715 | |
| 3ish | FAD | Thioredoxin reductase | 1.8.1.9 | 0.712 | |
| 4fwe | FAD | Lysine-specific histone demethylase 1B | 1 | 0.711 | |
| 5g3s | FDA | Flavin-dependent L-tryptophan oxidase VioA | / | 0.711 | |
| 2vqb | FAD | Putative flavin-containing monooxygenase | / | 0.710 | |
| 3lzx | FAD | Ferredoxin--NADP reductase 2 | 1.18.1.2 | 0.710 | |
| 4rpg | FAD | UDP-galactopyranose mutase | 5.4.99.9 | 0.710 | |
| 4xbf | FAD | Lysine-specific histone demethylase 1A | 1 | 0.710 | |
| 2vq7 | FAD | Putative flavin-containing monooxygenase | / | 0.709 | |
| 1ps9 | FAD | 2,4-dienoyl-CoA reductase | 1.3.1.34 | 0.708 | |
| 2yg7 | FAD | Putrescine oxidase | / | 0.708 | |
| 3m13 | FAD | Monomeric sarcosine oxidase | 1.5.3.1 | 0.708 | |
| 3sgl | FAD | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | / | 0.708 | |
| 3cge | FAD | Coenzyme A disulfide reductase | / | 0.707 | |
| 3lsi | FAD | Pyranose 2-oxidase | / | 0.707 | |
| 1nhq | FAD | NADH peroxidase | 1.11.1.1 | 0.706 | |
| 3rp8 | FAD | FAD-dependent urate hydroxylase | / | 0.706 | |
| 2npx | FAD | NADH peroxidase | 1.11.1.1 | 0.705 | |
| 2xlp | FAD | Putative flavin-containing monooxygenase | / | 0.704 | |
| 3atr | FDA | Conserved Archaeal protein | / | 0.702 | |
| 3urh | FAD | Dihydrolipoyl dehydrogenase | / | 0.702 | |
| 1zmd | FAD | Dihydrolipoyl dehydrogenase, mitochondrial | 1.8.1.4 | 0.701 | |
| 2fjd | SFD | Adenylylsulfate reductase, subunit A (AprA) | / | 0.701 | |
| 2q0k | FAD | Thioredoxin reductase | 1.8.1.9 | 0.701 | |
| 4eqx | FAD | Coenzyme A disulfide reductase | / | 0.701 | |
| 2qa1 | FAD | PgaE | / | 0.700 | |
| 4wct | FAD | Fructosyl amine:oxygen oxidoreductase | / | 0.700 | |
| 1gsn | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.699 | |
| 1h83 | FAD | Polyamine oxidase | 1.5.3.14 | 0.699 | |
| 3gdp | FAD | (R)-mandelonitrile lyase 2 | 4.1.2.10 | 0.698 | |
| 2ylt | FAD | Phenylacetone monooxygenase | 1.14.13.92 | 0.697 | |
| 3ic9 | FAD | Putative dihydrolipoamide dehydrogenase | / | 0.696 | |
| 1dnc | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.695 | |
| 1gre | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.695 | |
| 2gr0 | FAD | Ferredoxin reductase | / | 0.695 | |
| 1ju2 | FAD | (R)-mandelonitrile lyase 2 | 4.1.2.10 | 0.694 | |
| 1tdf | FAD | Thioredoxin reductase | 1.8.1.9 | 0.694 | |
| 2gh5 | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.694 | |
| 3mhp | FAD | Ferredoxin--NADP reductase, leaf isozyme, chloroplastic | 1.18.1.2 | 0.694 | |
| 3nn6 | FB0 | 6-hydroxy-L-nicotine oxidase | / | 0.694 | |
| 1zx9 | FAD | Mercuric reductase | 1.16.1.1 | 0.693 | |
| 2ylr | FAD | Phenylacetone monooxygenase | 1.14.13.92 | 0.693 | |
| 3dk8 | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.693 | |
| 4eqs | FAD | Coenzyme A disulfide reductase | / | 0.693 | |
| 1qg0 | FAD | Ferredoxin--NADP reductase, leaf isozyme, chloroplastic | 1.18.1.2 | 0.692 | |
| 3dk4 | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.691 | |
| 4h4v | FAD | Biphenyl dioxygenase ferredoxin reductase subunit | / | 0.691 | |
| 4h4t | FAD | Biphenyl dioxygenase ferredoxin reductase subunit | / | 0.690 | |
| 4h4u | FAD | Biphenyl dioxygenase ferredoxin reductase subunit | / | 0.690 | |
| 2ign | FAD | Pyranose 2-oxidase | / | 0.689 | |
| 3djg | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.689 | |
| 3oc4 | FAD | Oxidoreductase, pyridine nucleotide-disulfide family | / | 0.689 | |
| 2ylw | FAD | Phenylacetone monooxygenase | 1.14.13.92 | 0.687 | |
| 4b1b | FAD | Thioredoxin reductase | 1.8.1.9 | 0.686 | |
| 4txi | FAD | [F-actin]-methionine sulfoxide oxidase MICAL1 | 1.14.13 | 0.686 | |
| 2igo | FAD | Pyranose 2-oxidase | / | 0.685 | |
| 2xlr | FAD | Putative flavin-containing monooxygenase | / | 0.685 | |
| 3duw | SAH | O-methyltransferase, putative | / | 0.685 | |
| 2ar8 | FAD | Flavin-dependent tryptophan halogenase PrnA | 1.14.19.9 | 0.684 | |
| 4h4r | FAD | Biphenyl dioxygenase ferredoxin reductase subunit | / | 0.684 | |
| 4h4x | FAD | Biphenyl dioxygenase ferredoxin reductase subunit | / | 0.684 | |
| 2gv8 | FAD | Thiol-specific monooxygenase | 1.14.13 | 0.682 | |
| 3dgh | FAD | Thioredoxin reductase 1, mitochondrial | 1.8.1.9 | 0.682 | |
| 4aox | FAD | Steroid monooxygenase | / | 0.682 | |
| 5buk | FAD | FADH2-dependent halogenase | / | 0.682 | |
| 3k4c | FAD | Pyranose 2-oxidase | / | 0.681 | |
| 1grb | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.680 | |
| 2xdo | FAD | TetX family tetracycline inactivation enzyme | / | 0.680 | |
| 3dk9 | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.680 | |
| 4ykf | FAD | Alkyl hydroperoxide reductase subunit F | 1.8.1 | 0.680 | |
| 1f3p | FAD | Ferredoxin reductase | / | 0.679 | |
| 3bg7 | FAD | Pyranose 2-oxidase | / | 0.679 | |
| 4bv6 | FAD | Apoptosis-inducing factor 1, mitochondrial | 1.1.1 | 0.679 | |
| 4eqr | FAD | Coenzyme A disulfide reductase | / | 0.679 | |
| 4wqm | FAD | Toluene-4-monooxygenase electron transfer component | 1.18.1.3 | 0.679 | |
| 5a89 | FMN | Riboflavin biosynthesis protein RibF | 2.7.1.26 | 0.679 | |
| 1nhp | FAD | NADH peroxidase | 1.11.1.1 | 0.678 | |
| 1sez | FAD | Protoporphyrinogen oxidase, mitochondrial | 1.3.3.4 | 0.678 | |
| 2c3d | FAD | 2-oxopropyl-CoM reductase, carboxylating | 1.8.1.5 | 0.678 | |
| 2gqw | FAD | Ferredoxin reductase | / | 0.678 | |
| 4gav | FAD | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial | 1.6.5.9 | 0.678 | |
| 1gal | FAD | Glucose oxidase | 1.1.3.4 | 0.677 | |
| 2a87 | FAD | Thioredoxin reductase | 1.8.1.9 | 0.677 | |
| 2ywl | FAD | Thioredoxin reductase related protein | / | 0.677 | |
| 3lsh | FAD | Pyranose 2-oxidase | / | 0.677 | |
| 3sm8 | FNK | FAD-dependent catabolic D-arginine dehydrogenase DauA | / | 0.677 | |
| 4o5u | FAD | Alkyl hydroperoxide reductase subunit F | 1.8.1 | 0.677 | |
| 4yac | NAI | C alpha-dehydrogenase | / | 0.677 | |
| 5hsa | FAS | Alcohol oxidase 1 | 1.1.3.13 | 0.677 | |
| 1qo8 | FAD | Fumarate reductase flavoprotein subunit | / | 0.676 | |
| 2ylz | FAD | Phenylacetone monooxygenase | 1.14.13.92 | 0.676 | |
| 4hb9 | FAD | Uncharacterized protein | / | 0.676 | |
| 3dh9 | FAD | Thioredoxin reductase 1, mitochondrial | 1.8.1.9 | 0.675 | |
| 3dme | FAD | Putative conserved exported protein | / | 0.675 | |
| 3qvr | FAD | Glucose oxidase | 1.1.3.4 | 0.675 | |
| 5g3t | FDA | Flavin-dependent L-tryptophan oxidase VioA | / | 0.675 | |
| 1b4v | FAD | Cholesterol oxidase | 1.1.3.6 | 0.674 | |
| 2gr3 | FAD | Ferredoxin reductase | / | 0.674 | |
| 4mok | FAD | Pyranose 2-oxidase | / | 0.674 | |
| 4xwz | FAD | Fructosyl amine:oxygen oxidoreductase | / | 0.674 | |
| 2nvk | FAD | Thioredoxin reductase 1, mitochondrial | 1.8.1.9 | 0.673 | |
| 3pvc | FAD | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | / | 0.673 | |
| 4bk3 | FAD | Probable salicylate monooxygenase | / | 0.673 | |
| 5j60 | FAD | Thioredoxin reductase | / | 0.673 | |
| 1f8w | FAD | NADH peroxidase | 1.11.1.1 | 0.672 | |
| 4jnq | FDA | Thioredoxin reductase | / | 0.672 | |
| 3lsm | SFD | Pyranose 2-oxidase | / | 0.671 | |
| 4jdr | FAD | Dihydrolipoyl dehydrogenase | 1.8.1.4 | 0.671 | |
| 1k4q | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.670 | |
| 2du8 | FAD | D-amino-acid oxidase | 1.4.3.3 | 0.670 | |
| 2q0l | FAD | Thioredoxin reductase | 1.8.1.9 | 0.670 | |
| 3ntd | FAD | FAD-dependent pyridine nucleotide-disulphide oxidoreductase | / | 0.670 | |
| 4ech | FAD | Polyamine oxidase FMS1 | / | 0.670 | |
| 5fs6 | FAD | Apoptosis-inducing factor 1, mitochondrial | 1.1.1 | 0.670 | |
| 2v5u | FMN | Flavodoxin | / | 0.669 | |
| 3lad | FAD | Dihydrolipoyl dehydrogenase | / | 0.669 | |
| 1gra | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.668 | |
| 2y48 | FAD | Lysine-specific histone demethylase 1A | 1 | 0.668 | |
| 2z6c | FMN | Phototropin-1 | 2.7.11.1 | 0.668 | |
| 3f8p | NAD | NADH oxidase/thioredoxin reductase | / | 0.668 | |
| 4up3 | FAD | Thioredoxin reductase | / | 0.668 | |
| 4ykg | FAD | Alkyl hydroperoxide reductase subunit F | 1.8.1 | 0.668 | |
| 5dbj | FAD | FADH2-dependent halogenase PltA | / | 0.668 | |
| 2oal | FAD | Flavin-dependent tryptophan halogenase RebH | 1.14.19.9 | 0.667 | |
| 1bwc | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.666 | |
| 1lvl | FAD | Dihydrolipoyl dehydrogenase | 1.8.1.4 | 0.666 | |
| 2hqm | FAD | Glutathione reductase | 1.8.1.7 | 0.666 | |
| 3pl8 | FAD | Pyranose 2-oxidase | / | 0.666 | |
| 4g6h | FAD | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial | 1.6.5.9 | 0.666 | |
| 4gr1 | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.666 | |
| 4rph | FAD | UDP-galactopyranose mutase | 5.4.99.9 | 0.666 | |
| 3k7m | FAD | 6-hydroxy-L-nicotine oxidase | / | 0.665 | |
| 4udr | FAD | 5-(hydroxymethyl)furfural oxidase | / | 0.665 | |
| 4z2t | FAD | 2-hydroxybiphenyl-3-monooxygenase | / | 0.665 | |
| 2cdu | FAD | NADH oxidase | / | 0.664 | |
| 4u2s | FDA | Cholesterol oxidase | 1.1.3.6 | 0.664 | |
| 2oa1 | FAD | Flavin-dependent tryptophan halogenase RebH | 1.14.19.9 | 0.663 | |
| 4ccq | FAD | Thioredoxin reductase | / | 0.663 | |
| 4g73 | FAD | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial | 1.6.5.9 | 0.663 | |
| 4g9k | FAD | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial | 1.6.5.9 | 0.663 | |
| 5a8a | FMN | Riboflavin biosynthesis protein RibF | 2.7.1.26 | 0.663 | |
| 1jnz | FAD | Adenylylsulfate reductase, subunit A (AprA) | / | 0.662 | |
| 2qae | FAD | Dihydrolipoyl dehydrogenase | 1.8.1.4 | 0.662 | |
| 3gyj | FAD | Cholesterol oxidase | 1.1.3.6 | 0.662 | |
| 4bjz | FAD | Probable salicylate monooxygenase | / | 0.662 | |
| 4mih | FAD | Pyranose 2-oxidase | 1.1.3.10 | 0.662 | |
| 4h2n | FAD | 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase | / | 0.661 | |
| 4j34 | FAD | Kynurenine 3-monooxygenase | / | 0.661 | |
| 1cf3 | FAD | Glucose oxidase | 1.1.3.4 | 0.660 | |
| 2ym1 | FAD | Phenylacetone monooxygenase | 1.14.13.92 | 0.660 | |
| 3qvp | FAD | Glucose oxidase | 1.1.3.4 | 0.660 | |
| 3t2y | FAD | Sulfide-quinone reductase | / | 0.660 | |
| 3t37 | FAD | Pyridoxine 4-oxidase | / | 0.660 | |
| 4jn9 | FAD | DepH | / | 0.660 | |
| 4m52 | FAD | Dihydrolipoyl dehydrogenase | 1.8.1.4 | 0.660 | |
| 2gmh | FAD | Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial | 1.5.5.1 | 0.659 | |
| 2h94 | FAD | Lysine-specific histone demethylase 1A | 1 | 0.659 | |
| 4a5l | FAD | Thioredoxin reductase | / | 0.659 | |
| 2eq7 | FAD | Dihydrolipoyl dehydrogenase | / | 0.658 | |
| 2o06 | MTA | Spermidine synthase | 2.5.1.16 | 0.658 | |
| 4b63 | FAD | L-ornithine N(5)-monooxygenase | / | 0.658 | |
| 4cbq | FAD | Thioredoxin reductase | / | 0.658 | |
| 4tm4 | FDA | KtzI | / | 0.658 | |
| 1d7l | RFL | p-hydroxybenzoate hydroxylase | / | 0.657 | |
| 1npx | FAD | NADH peroxidase | 1.11.1.1 | 0.657 | |
| 2bab | FAD | Putative aminooxidase | / | 0.657 | |
| 2cvj | FAD | Thioredoxin reductase related protein | / | 0.657 | |
| 4j31 | FAD | Kynurenine 3-monooxygenase | / | 0.657 | |
| 4x9m | FAD | Uncharacterized protein MG039 homolog | / | 0.657 | |
| 4z24 | FAD | Putative GMC-type oxidoreductase R135 | 1 | 0.657 | |
| 4bmo | FMN | Protein NrdI | / | 0.656 | |
| 4g74 | FAD | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial | 1.6.5.9 | 0.656 | |
| 5hxw | FAD | L-amino acid deaminase | / | 0.656 | |
| 1m6i | FAD | Apoptosis-inducing factor 1, mitochondrial | 1.1.1 | 0.655 | |
| 1ng4 | FAD | Glycine oxidase | 1.4.3.19 | 0.655 | |
| 3ad9 | NAD | Subunit alpha of sarocosine oxidase | / | 0.655 | |
| 3grs | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.655 | |
| 1gv4 | FAD | Apoptosis-inducing factor 1, mitochondrial | 1.1.1 | 0.654 | |
| 1mo9 | FAD | 2-oxopropyl-CoM reductase, carboxylating | 1.8.1.5 | 0.654 | |
| 2eq6 | FAD | Dihydrolipoyl dehydrogenase | / | 0.654 | |
| 3klj | FAD | NADH-rubredoxin oxidoreductase | 1.18.1.1 | 0.654 | |
| 4opt | FDA | Conserved Archaeal protein | / | 0.654 | |
| 1fnc | FDA | Ferredoxin--NADP reductase, chloroplastic | 1.18.1.2 | 0.653 | |
| 2ok7 | FAD | Ferredoxin--NADP reductase, apicoplast | / | 0.653 | |
| 4j36 | FAD | Kynurenine 3-monooxygenase | / | 0.653 | |
| 4ocg | FAD | FAD-dependent pyridine nucleotide-disulphide oxidoreductase | / | 0.653 | |
| 1c0k | FAD | D-amino-acid oxidase | 1.4.3.3 | 0.652 | |
| 1d4d | FAD | Fumarate reductase flavoprotein subunit | 1.3.5.4 | 0.652 | |
| 1kif | FAD | D-amino-acid oxidase | 1.4.3.3 | 0.652 | |
| 1n4u | FAE | Cholesterol oxidase | 1.1.3.6 | 0.652 | |
| 3bi5 | FAD | Polyamine oxidase FMS1 | / | 0.652 | |
| 3fbs | FAD | Oxidoreductase | / | 0.652 | |
| 1c0l | FAD | D-amino-acid oxidase | 1.4.3.3 | 0.651 | |
| 1get | FAD | Glutathione reductase | 1.8.1.7 | 0.651 | |
| 1joa | FAD | NADH peroxidase | 1.11.1.1 | 0.651 | |
| 1ng3 | FAD | Glycine oxidase | 1.4.3.19 | 0.651 | |
| 3cox | FAD | Cholesterol oxidase | 1.1.3.6 | 0.651 | |
| 3djj | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.651 | |
| 3k4n | FAD | Pyranose 2-oxidase | / | 0.651 | |
| 3kkj | FAD | Renalase | / | 0.651 | |
| 4guv | FAD | TetX family tetracycline inactivation enzyme | / | 0.651 | |
| 4nzh | FAD | L-ornithine N(5)-monooxygenase | / | 0.651 | |
| 4qi5 | FAD | Cellobiose dehydrogenase | / | 0.651 | |
| 1nqa | NAD | Glyceraldehyde-3-phosphate dehydrogenase | / | 0.650 | |
| 2v6o | FAD | Thioredoxin glutathione reductase | / | 0.650 | |
| 3axb | FAD | Putative oxidoreductase | / | 0.650 | |
| 4a99 | FAD | TetX family tetracycline inactivation enzyme | / | 0.650 | |
| 5ez7 | FAD | Probable FAD-dependent oxidoreductase PA4991 | / | 0.650 |